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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7NYU | 12654 | 2023-11-21 | 2021-03-23 | 3.8 | 3.88 | 4.17 | 3.9 | 0.005 | 0.86 | 0.0 | 0.05 | 13.98 | 0.01 | 2.097 | 4.70 | 0.82 | 3.3 | 96.7 | 0.0 | -1.67 | 0.52 | 0.59 | 0.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35228 | 4618 | 18 | 0 | 11 | 0 | 0 | logfile |
✘ | 7NYV | 12655 | 2023-11-21 | 2021-03-23 | 3.7 | 3.72 | 4.17 | 3.8 | 0.005 | 0.85 | 0.0 | 0.05 | 13.96 | 0.01 | 1.913 | 5.75 | 0.85 | 3.3 | 96.7 | 0.0 | -1.68 | 0.52 | 0.62 | 1.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35228 | 4618 | 18 | 0 | 11 | 0 | 0 | logfile |
✘ | 7WRC | 32722 | 2023-11-20 | 2022-01-26 | 3.21 | 3.55 | — | 3.4 | 0.010 | 1.07 | 0.0 | 0.06 | 10.59 | 0.01 | 2.235 | 5.92 | 0.12 | 7.0 | 93.0 | 0.0 | -3.90 | 0.71 | 0.77 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30468 | 3720 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 6LMK | 0917 | 2023-11-14 | 2019-12-26 | 3.7 | 3.89 | — | 3.8 | 0.009 | 0.96 | 0.0 | 0.06 | 15.10 | 0.01 | 2.283 | 7.02 | 0.62 | 6.5 | 93.5 | 0.0 | -4.19 | 0.68 | 0.82 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9240 | 1178 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WYB | 32890 | 2023-11-14 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VDD | 31914 | 2023-11-15 | 2021-09-06 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11940 | 1044 | 10 | 0 | 0 | 0 | 3736 | logfile |
✘ | 7WRA | 32720 | 2023-11-20 | 2022-01-26 | 2.98 | 3.19 | — | 3.3 | 0.006 | 0.99 | 0.0 | 0.05 | 10.56 | 0.01 | 2.231 | 6.76 | 0.60 | 6.0 | 94.0 | 0.0 | -3.96 | 0.69 | 0.78 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.55 | — | — | — | 1.63 | 30373 | 3720 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7WRB | 32721 | 2023-11-20 | 2022-01-26 | 2.88 | 3.16 | — | 3.3 | 0.006 | 1.01 | 0.0 | 0.05 | 10.44 | 0.01 | 2.276 | 6.29 | 0.12 | 6.0 | 93.9 | 0.1 | -3.78 | 0.70 | 0.79 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30376 | 3720 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7Z10 | 14436 | 2023-11-15 | 2022-02-24 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12574 | 1556 | 13 | 0 | 9 | 0 | 0 | logfile |
✘ | 6NT3 | 0500 | 2023-11-15 | 2019-01-28 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10934 | 1278 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 7V69 | 31739 | 2023-11-15 | 2021-08-20 | 3.4 | 2.24 | — | 2.0 | 0.003 | 0.65 | 0.0 | 0.04 | 12.64 | 0.00 | 2.096 | 13.28 | 0.00 | 2.9 | 97.1 | 0.0 | -2.02 | 0.68 | 0.64 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8539 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MD3 | 23764 | 2023-11-16 | 2021-04-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45992 | 3133 | 13 | 0 | 8 | 0 | 22961 | logfile |
✘ | 6o0Z | 0585 | 2023-11-15 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 16.28 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-11-14 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VoY | 32062 | 2023-11-18 | 2021-10-15 | 4.2 | 3.14 | — | 3.1 | 0.009 | 0.97 | 0.0 | 0.10 | 14.41 | 0.01 | 2.056 | 16.17 | 1.25 | 4.6 | 95.4 | 0.0 | 0.99 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22119 | 2479 | 71 | 0 | 44 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2023-11-13 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 7MDi | 23773 | 2023-11-20 | 2021-04-05 | 4.3 | 4.42 | — | 4.3 | 0.006 | 0.75 | 0.0 | 0.04 | 13.20 | 0.00 | 2.089 | 11.76 | 0.17 | 10.8 | 89.2 | 0.1 | -4.24 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 7SCJ | 25036 | 2023-11-14 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 11.12 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 7LX0 | 23563 | 2023-11-18 | 2021-03-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72462 | 6699 | 60 | 0 | 447 | 0 | 0 | logfile |
✘ | 7ETo | 31301 | 2023-11-22 | 2021-05-13 | 4.0 | 3.89 | — | 4.0 | 0.007 | 0.94 | 0.0 | 0.06 | 14.66 | 0.01 | 2.228 | 7.22 | 0.70 | 6.6 | 93.4 | 0.0 | -4.12 | 0.40 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98674 | 12386 | 26 | 0 | 0 | 0 | 0 | logfile |