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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NJ7 | 12375 | 2023-12-14 | 2021-02-16 | 4.82 | 5.23 | — | 4.8 | 0.004 | 0.73 | 1.0 | 0.04 | 14.38 | 0.01 | 1.907 | 8.72 | 0.19 | 4.3 | 95.7 | 0.0 | -0.72 | 0.74 | 0.46 | — | 4.9 | 0.003 | 0.63 | 0.0 | 0.04 | 14.19 | 0.00 | 1.861 | 18.22 | 0.00 | 4.8 | 95.2 | 0.0 | -0.66 | 2.34 | 0.82 | 0.64 | — | 28818 | 1797 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6SHS | 10204 | 2023-12-08 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.05 | 12.95 | 0.00 | 2.164 | 8.10 | 0.00 | 17.1 | 82.9 | 0.0 | -5.36 | 1.68 | 0.69 | 0.65 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7F46 | 31444 | 2023-12-08 | 2021-06-17 | 4.79 | 5.15 | — | 3.3 | 0.006 | 0.84 | 0.0 | 0.05 | 13.32 | 0.01 | 2.218 | 12.18 | 0.00 | 8.9 | 91.1 | 0.0 | -2.90 | 0.77 | 0.60 | — | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 12.62 | 0.01 | 2.201 | 12.02 | 0.00 | 5.6 | 94.4 | 0.0 | -1.62 | 1.17 | 0.78 | 0.59 | — | 6564 | 842 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2023-12-10 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 11.60 | 0.00 | 0.793 | 10.58 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 15.83 | 0.00 | 2.130 | 11.87 | 0.80 | 2.8 | 97.1 | 0.1 | 0.26 | 0.87 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✔ | 7NJ5 | 12373 | 2023-12-14 | 2021-02-16 | 4.63 | 4.97 | — | 4.6 | 0.004 | 0.73 | 1.0 | 0.05 | 14.29 | 0.01 | 1.907 | 8.73 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.75 | 0.49 | — | 4.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.61 | 0.00 | 1.955 | 19.49 | 0.00 | 4.3 | 95.7 | 0.0 | -0.92 | 2.36 | 0.83 | 0.68 | — | 28806 | 1800 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7Z2A | 14459 | 2023-12-09 | 2022-02-26 | 4.3 | 4.49 | — | 4.3 | 0.012 | 1.59 | 2.0 | 0.09 | 14.75 | 0.01 | 0.925 | 8.38 | 0.48 | 2.8 | 97.0 | 0.2 | 0.00 | 0.80 | 0.62 | — | 4.2 | 0.004 | 0.61 | 0.0 | 0.04 | 14.33 | 0.00 | 1.794 | 59.65 | 0.00 | 5.2 | 94.7 | 0.1 | 0.19 | 1.82 | 0.90 | 0.80 | — | 12244 | 1201 | 5 | 0 | 4 | 0 | 2765 | logfile |
✔ | 7WLC | 32581 | 2023-12-07 | 2022-01-13 | 4.0 | 4.24 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.71 | 0.00 | 2.198 | 15.62 | 0.00 | 6.1 | 93.9 | 0.0 | -1.35 | 0.71 | 0.77 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 16.00 | 0.00 | 2.188 | 18.56 | 0.56 | 8.3 | 91.7 | 0.0 | -1.72 | 0.54 | 0.72 | 0.78 | — | 3307 | 430 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NK2 | 12429 | 2023-12-14 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 14.31 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.003 | 0.67 | 0.0 | 0.04 | 14.49 | 0.00 | 1.865 | 19.08 | 0.00 | 5.7 | 94.3 | 0.0 | -0.83 | 4.61 | 0.73 | 0.67 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✘ | 6QEL | 4537 | 2023-12-09 | 2019-01-08 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64816 | 4092 | 24 | 0 | 24 | 0 | 32302 | logfile |
✘ | 6Y5A | 10692 | 2023-12-15 | 2020-02-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32403 | 1940 | 10 | 0 | 5 | 0 | 16272 | logfile |
✔ | 6R23 | 4708 | 2023-12-07 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7X76 | 33033 | 2023-12-09 | 2022-03-09 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64334 | 3793 | 18 | 168 | 15 | 0 | 31436 | logfile |
✔ | 5LiJ | 4054 | 2023-12-07 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WU5 | 32820 | 2023-12-08 | 2022-02-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6948 | 888 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6RAJ | 4777 | 2023-12-09 | 2019-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10198 | 1282 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 7DXH | 30909 | 2023-12-12 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20054 | 2150 | 31 | 0 | 69 | 0 | 0 | logfile |
✘ | 7DEG | 30657 | 2023-12-10 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2023-12-14 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 14.19 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.68 | 0.00 | 1.880 | 18.37 | 0.06 | 5.6 | 94.4 | 0.0 | -0.70 | 2.34 | 0.80 | 0.63 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7WD8 | 32434 | 2023-12-07 | 2021-12-21 | 4.3 | 3.48 | — | 3.5 | 0.002 | 0.51 | 0.0 | 0.04 | 6.43 | 0.00 | 2.246 | 8.80 | 0.00 | 4.1 | 95.7 | 0.2 | -0.96 | 0.60 | 0.61 | — | 3.4 | 0.005 | 0.84 | 0.0 | 0.05 | 12.81 | 0.01 | 2.128 | 19.11 | 0.00 | 7.2 | 92.6 | 0.2 | -0.68 | 1.67 | 0.64 | 0.68 | — | 4029 | 524 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RH6 | 24456 | 2023-12-15 | 2021-07-16 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90627 | 5901 | 42 | 0 | 60 | 0 | 43188 | logfile |