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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6ZY9 | 11555 | 2023-12-10 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 13.73 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 6N2Y | 9333 | 2023-12-16 | 2018-11-14 | 3.0 | 3.23 | 2.99 | 3.2 | 0.009 | 1.19 | 14.0 | 0.07 | 10.71 | 0.01 | 0.765 | 8.98 | 0.40 | 3.4 | 96.5 | 0.1 | -2.50 | 0.62 | 0.74 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35043 | 4696 | 27 | 0 | 26 | 0 | 0 | logfile |
✘ | 7VPD | 32063 | 2023-12-15 | 2021-10-15 | 3.77 | 4.04 | 3.88 | 3.9 | 0.005 | 0.79 | 0.0 | 0.05 | 20.16 | 0.01 | 1.979 | 6.99 | 0.44 | 3.6 | 96.4 | 0.0 | -0.05 | 0.82 | 0.73 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30924 | 3531 | 14 | 168 | 9 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-12-13 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7BGD | 12178 | 2023-12-16 | 2021-01-06 | 3.2 | 3.27 | — | 3.2 | 0.008 | 1.30 | 0.0 | 0.06 | 22.57 | 0.01 | 2.327 | 3.64 | 2.16 | 8.0 | 91.7 | 0.3 | -5.26 | 0.85 | 0.83 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35364 | 1410 | 14 | 1128 | 0 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-12-13 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7BXU | 30238 | 2023-12-10 | 2020-04-20 | 3.7 | 3.82 | — | 3.8 | 0.008 | 1.17 | 2.0 | 0.07 | 11.21 | 0.01 | 2.267 | 7.78 | 0.43 | 8.8 | 91.2 | 0.0 | -4.33 | 0.73 | 0.87 | 3.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13444 | 1752 | 6 | 0 | 14 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2023-12-16 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LBH | 0869 | 2023-12-08 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E0H | 30932 | 2023-12-08 | 2021-01-28 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8017 | 661 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 6ZB4 | 11144 | 2023-12-13 | 2020-06-06 | 3.03 | 3.12 | 3.02 | 3.1 | 0.007 | 0.69 | 0.0 | 0.05 | 16.16 | 0.01 | 1.814 | 4.85 | 3.84 | 8.2 | 91.7 | 0.1 | -4.11 | 0.75 | 0.83 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24841 | 3133 | 7 | 0 | 30 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-12-13 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6TF9 | 10491 | 2023-12-10 | 2019-11-13 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7EoT | 31230 | 2023-12-13 | 2021-04-22 | 3.8 | 4.25 | — | 4.1 | 0.003 | 0.52 | 2.0 | 0.04 | 9.38 | 0.00 | 2.074 | 10.52 | 2.22 | 4.2 | 95.8 | 0.0 | 0.02 | 0.82 | 0.71 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24598 | 3088 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 6AEi | 9615 | 2023-12-12 | 2018-08-05 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21142 | 2568 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 6KLS | 0716 | 2023-12-10 | 2019-07-30 | 3.3 | 3.40 | 3.21 | 3.4 | 0.014 | 1.22 | 2.0 | 0.05 | 18.65 | 0.03 | 1.992 | 14.52 | 0.69 | 10.7 | 89.2 | 0.1 | -3.67 | 0.66 | 0.77 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13011 | 1530 | 12 | 0 | 17 | 0 | 0 | logfile |
✘ | 6NJ9 | 9384 | 2023-12-13 | 2019-01-02 | 2.96 | 3.09 | 3.33 | 3.1 | 0.015 | 1.00 | 0.0 | 0.06 | 24.78 | 0.01 | 2.309 | 2.81 | 0.29 | 4.6 | 95.4 | 0.0 | -2.74 | 0.80 | 0.86 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18814 | 1590 | 16 | 292 | 2 | 0 | 0 | logfile |
✘ | 7WB1 | 32392 | 2023-12-09 | 2021-12-15 | 3.7 | 3.09 | — | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 21.51 | 0.00 | 2.046 | 11.12 | 0.00 | 4.7 | 95.2 | 0.1 | 0.55 | 0.83 | 0.75 | 0.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11524 | 960 | 4 | 178 | 0 | 0 | 0 | logfile |
✘ | 7DK4 | 30702 | 2023-12-16 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MGZ | 23831 | 2023-12-16 | 2021-04-14 | 2.8 | 2.90 | — | 2.9 | 0.014 | 2.03 | 8.0 | 0.11 | 16.60 | 0.02 | 1.574 | 3.95 | 1.66 | 3.4 | 96.5 | 0.2 | -1.41 | 0.59 | 0.76 | 4.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34852 | 2172 | 8 | 0 | 16 | 0 | 17316 | logfile |