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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UiG | 26545 | 2023-12-14 | 2022-03-29 | 4.3 | 8.24 | 4.32 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 12.88 | 0.01 | 0.850 | 11.11 | 0.09 | 1.3 | 98.5 | 0.1 | 1.54 | 0.45 | 0.44 | — | 3.9 | 0.011 | 0.85 | 0.0 | 0.04 | 12.99 | 0.01 | 2.065 | 23.76 | 0.00 | 3.7 | 96.3 | 0.0 | 0.65 | 0.85 | 0.58 | 0.79 | — | 27580 | 3390 | 17 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YMY | 10848 | 2023-12-10 | 2020-04-10 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14612 | 1766 | 19 | 0 | 16 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2023-12-10 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7WZN | 32907 | 2023-12-14 | 2022-02-18 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27190 | 3726 | 30 | 0 | 211 | 0 | 0 | logfile |
✘ | 6SWC | 10322 | 2023-12-12 | 2019-09-20 | 3.3 | 4.36 | 3.31 | 3.3 | 0.015 | 0.97 | 0.0 | 0.05 | 21.88 | 0.04 | 1.823 | 9.66 | 0.13 | 13.4 | 86.6 | 0.0 | -5.19 | 0.83 | 0.72 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70744 | 4519 | 48 | 1593 | 41 | 42 | 0 | logfile |
✘ | 8ABZ | 15328 | 2023-12-13 | 2022-07-05 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25739 | 3166 | 9 | 47 | 3 | 0 | 0 | logfile |
✘ | 7UEA | 26469 | 2023-12-13 | 2022-03-21 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26313 | 2793 | 16 | 0 | 77 | 0 | 0 | logfile |
✘ | 8CYD | 27075 | 2023-12-14 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M7J | 23715 | 2023-12-13 | 2021-03-28 | 4.3 | 5.19 | — | 4.4 | 0.005 | 0.93 | 1.0 | 0.06 | 15.47 | 0.01 | 2.117 | 19.19 | 5.04 | 6.4 | 93.5 | 0.1 | -2.14 | 0.84 | 0.71 | — | 4.5 | 0.005 | 0.77 | 0.0 | 0.04 | 13.76 | 0.01 | 2.081 | 31.30 | 0.00 | 7.3 | 92.7 | 0.0 | -1.55 | 1.27 | 0.86 | 0.78 | — | 23224 | 3124 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WMT | 21852 | 2023-12-15 | 2020-04-21 | 4.43 | 5.65 | — | 3.8 | 0.013 | 1.54 | 4.0 | 0.11 | 15.19 | 0.01 | 1.825 | 58.99 | 5.14 | 3.3 | 96.1 | 0.6 | 3.17 | 0.78 | 0.57 | — | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 16.04 | 0.00 | 1.978 | 17.17 | 0.00 | 5.5 | 94.3 | 0.2 | -0.32 | 1.93 | 0.88 | 0.82 | — | 31931 | 3741 | 17 | 118 | 150 | 0 | 0 | logfile |
✘ | 7UTA | 26764 | 2023-12-13 | 2022-04-26 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24323 | 3068 | 20 | 0 | 22 | 55 | 0 | logfile |
✔ | 7oiM | 12932 | 2023-12-16 | 2021-05-11 | 4.0 | 4.68 | 3.92 | 3.7 | 0.006 | 1.32 | 7.0 | 0.07 | 14.13 | 0.01 | 2.069 | 5.16 | 0.05 | 8.1 | 91.7 | 0.2 | -3.63 | 0.81 | 0.66 | — | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 15.28 | 0.00 | 2.109 | 15.01 | 0.25 | 7.7 | 92.2 | 0.0 | -0.46 | 0.68 | 0.90 | 0.81 | — | 35597 | 4426 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 6EBM | 9026 | 2023-12-08 | 2018-08-06 | 4.0 | 4.06 | — | 3.9 | 0.012 | 1.10 | 0.0 | 0.06 | 9.31 | 0.01 | 2.049 | 5.25 | 0.00 | 5.4 | 94.6 | 0.0 | -4.86 | 0.66 | 0.79 | — | 3.8 | 0.004 | 0.92 | 0.0 | 0.05 | 14.09 | 0.00 | 2.206 | 18.26 | 1.17 | 4.5 | 95.5 | 0.0 | 0.27 | 0.98 | 0.66 | 0.80 | — | 8532 | 1192 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TAR | 41140 | 2023-12-07 | 2023-06-27 | 4.0 | 3.08 | 3.83 | 2.0 | 0.005 | 0.76 | 0.0 | 0.06 | 7.03 | 0.00 | 2.106 | 1.76 | 0.00 | 1.8 | 98.2 | 0.0 | -1.85 | 0.74 | 0.68 | — | 2.7 | 0.004 | 0.75 | 0.0 | 0.04 | 5.04 | 0.00 | 2.085 | 11.50 | 0.00 | 14.1 | 85.9 | 0.0 | -2.00 | 1.28 | 0.79 | 0.76 | — | 54010 | 8984 | 24 | 0 | 4 | 0 | 18053 | logfile |
✘ | 8DM9 | 27531 | 2023-12-15 | 2022-07-08 | 2.56 | 3.10 | 2.68 | 2.8 | 0.005 | 0.88 | 0.0 | 0.06 | 13.28 | 0.01 | 2.264 | 3.60 | 0.15 | 2.0 | 97.9 | 0.1 | -0.21 | 0.78 | 0.81 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30004 | 3689 | 26 | 0 | 62 | 0 | 0 | logfile |
✘ | 7Z6Q | 14528 | 2023-12-16 | 2022-03-14 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36557 | 3956 | 28 | 0 | 91 | 10 | 0 | logfile |
✔ | 8F6i | 28884 | 2023-12-09 | 2022-11-16 | 4.03 | 4.27 | 4.04 | 4.2 | 0.002 | 0.50 | 0.0 | 0.04 | 13.67 | 0.00 | 2.070 | 7.30 | 0.00 | 5.0 | 94.9 | 0.2 | 0.18 | 0.76 | 0.80 | — | 4.2 | 0.005 | 0.67 | 0.0 | 0.04 | 14.02 | 0.00 | 1.940 | 12.72 | 0.18 | 6.7 | 93.3 | 0.1 | 0.05 | 0.43 | 0.77 | 0.81 | — | 10367 | 1351 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 7D0J | 30536 | 2023-12-11 | 2020-09-10 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68860 | 5923 | 56 | 0 | 453 | 0 | 0 | logfile |
✘ | 8DPN | 27639 | 2023-12-11 | 2022-07-15 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16067 | 1998 | 12 | 0 | 8 | 40 | 0 | logfile |
✔ | 8E4C | 27888 | 2023-12-08 | 2022-08-18 | 4.0 | 3.22 | 3.15 | 3.1 | 0.005 | 0.84 | 2.0 | 0.07 | 16.28 | 0.01 | 2.251 | 7.49 | 1.84 | 6.1 | 93.9 | 0.0 | -0.24 | 0.48 | 0.49 | — | 3.1 | 0.003 | 0.75 | 0.0 | 0.05 | 17.15 | 0.01 | 2.097 | 15.37 | 0.42 | 5.8 | 94.2 | 0.0 | -0.53 | 1.32 | 0.48 | 0.47 | — | 6398 | 805 | 6 | 0 | 5 | 0 | 0 | logfile |