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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6J6Q | 0692 | 2023-12-14 | 2019-01-15 | 3.7 | 3.85 | — | 3.7 | 0.008 | 0.99 | 0.0 | 0.09 | 16.71 | 0.01 | 1.463 | 18.21 | 2.93 | 4.9 | 94.2 | 0.9 | -3.65 | 0.62 | 0.66 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80535 | 9167 | 50 | 549 | 15 | 0 | 0 | logfile |
✘ | 7JN3 | 22400 | 2023-12-10 | 2020-08-03 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 14 | 68 | 8 | 0 | 0 | logfile |
✘ | 7S6L | 24879 | 2023-12-13 | 2021-09-14 | 4.0 | 4.77 | 4.03 | 4.2 | 0.020 | 1.74 | 0.0 | 0.11 | 9.97 | 0.01 | 2.336 | 0.63 | 0.04 | 2.2 | 97.8 | 0.0 | 0.74 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24755 | 3117 | 15 | 0 | 30 | 0 | 0 | logfile |
✘ | 6XL9 | 22236 | 2023-12-16 | 2020-06-28 | 2.5 | 3.20 | — | 3.1 | 0.008 | 0.90 | 0.0 | 0.06 | 17.12 | 0.01 | 2.025 | 5.93 | 0.00 | 1.0 | 98.9 | 0.0 | -3.38 | 0.71 | 0.81 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35113 | 4137 | 18 | 110 | 8 | 21 | 0 | logfile |
✘ | 7S6J | 24877 | 2023-12-15 | 2021-09-14 | 3.4 | 3.70 | 3.47 | 3.6 | 0.020 | 1.80 | 0.0 | 0.11 | 9.98 | 0.01 | 2.401 | 0.72 | 0.18 | 4.0 | 96.0 | 0.0 | 0.16 | 0.80 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30795 | 3894 | 21 | 0 | 33 | 0 | 0 | logfile |
✘ | 6J6G | 0686 | 2023-12-13 | 2019-01-15 | 3.2 | 3.37 | — | 3.2 | 0.007 | 0.94 | 0.0 | 0.09 | 16.36 | 0.01 | 1.903 | 15.53 | 3.03 | 4.6 | 94.9 | 0.5 | -3.38 | 0.67 | 0.71 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79042 | 8981 | 47 | 550 | 14 | 0 | 0 | logfile |
✘ | 7QCo | 13898 | 2023-12-15 | 2021-11-24 | 3.7 | 3.89 | 3.86 | 3.7 | 0.006 | 0.93 | 0.0 | 0.05 | 21.64 | 0.02 | 1.932 | 23.52 | 9.61 | 13.9 | 86.0 | 0.2 | -4.15 | 0.72 | 0.69 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90396 | 8812 | 78 | 0 | 462 | 0 | 0 | logfile |
✘ | 7SGR | 25116 | 2023-12-16 | 2021-10-07 | 2.9 | 3.27 | — | 3.2 | 0.007 | 0.79 | 0.0 | 0.04 | 15.21 | 0.01 | 2.202 | 6.45 | 0.00 | 4.7 | 95.3 | 0.0 | 0.89 | 0.65 | 0.78 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34989 | 4397 | 21 | 0 | 37 | 0 | 0 | logfile |
✘ | 7UNC | 26620 | 2023-12-07 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✘ | 7V85 | 31790 | 2023-12-16 | 2021-08-22 | 3.3 | 4.20 | — | 3.5 | 0.005 | 0.66 | 0.0 | 0.05 | 14.31 | 0.00 | 2.111 | 12.78 | 0.03 | 6.7 | 93.2 | 0.1 | -0.87 | 0.84 | 0.79 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35101 | 4306 | 39 | 0 | 75 | 0 | 0 | logfile |
✘ | 6DQJ | 7978 | 2023-12-14 | 2018-06-11 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138477 | 8724 | 8 | 0 | 4 | 0 | 69265 | logfile |
✘ | 6PUY | 20484 | 2023-12-09 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 8F3D | 28846 | 2023-12-08 | 2022-11-09 | 3.4 | 2.64 | 3.48 | 3.3 | 0.005 | 0.93 | 0.0 | 0.05 | 13.03 | 0.01 | 1.784 | 21.50 | 0.39 | 9.3 | 90.7 | 0.0 | -1.29 | 0.57 | 0.62 | 0.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57846 | 7464 | 18 | 0 | 6 | 0 | 0 | logfile |
✘ | 8DDS | 27340 | 2023-12-15 | 2022-06-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 8DDV | 27343 | 2023-12-15 | 2022-06-19 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 6Co7 | 7542 | 2023-12-16 | 2018-03-12 | 3.07 | 3.22 | — | 3.3 | 0.011 | 1.39 | 0.0 | 0.06 | 14.01 | 0.01 | 2.070 | 1.58 | 0.33 | 5.6 | 94.3 | 0.1 | -2.00 | 0.42 | 0.51 | 3.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35255 | 4244 | 12 | 0 | 75 | 0 | 0 | logfile |
✘ | 6DRA | 7991 | 2023-12-14 | 2018-06-11 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139084 | 8764 | 8 | 0 | 12 | 0 | 69544 | logfile |
✘ | 8ED8 | 28032 | 2023-12-15 | 2022-09-03 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 7S6K | 24878 | 2023-12-15 | 2021-09-14 | 3.4 | 3.64 | 3.40 | 3.6 | 0.020 | 1.79 | 0.0 | 0.11 | 9.77 | 0.01 | 2.392 | 0.89 | 0.00 | 3.4 | 96.6 | 0.0 | 0.43 | 0.80 | 0.82 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30903 | 3885 | 24 | 0 | 45 | 0 | 0 | logfile |
✘ | 7WYi | 32892 | 2023-12-13 | 2022-02-16 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25007 | 3631 | 28 | 0 | 171 | 0 | 0 | logfile |