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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7KAT | 22783 | 2023-12-09 | 2020-10-01 | 4.4 | 5.04 | 4.41 | 4.5 | 0.002 | 0.51 | 0.0 | 0.04 | 11.32 | 0.00 | 2.185 | 6.90 | 0.00 | 1.9 | 98.1 | 0.0 | -0.63 | 0.65 | 0.83 | — | 4.5 | 0.005 | 0.67 | 0.0 | 0.04 | 12.03 | 0.00 | 2.069 | 13.13 | 0.00 | 3.4 | 96.6 | 0.0 | 1.88 | 1.32 | 0.66 | 0.85 | — | 10431 | 1340 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SWA | 10321 | 2023-12-14 | 2019-09-20 | 3.1 | 3.53 | — | 3.4 | 0.002 | 0.45 | 0.0 | 0.03 | 21.87 | 0.00 | 1.115 | 10.82 | 0.43 | 4.2 | 95.6 | 0.2 | -2.39 | 0.68 | 0.83 | 2.07 | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 22.45 | 0.00 | 1.794 | 12.78 | 0.84 | 5.8 | 94.2 | 0.0 | -0.51 | 1.44 | 0.70 | 0.87 | 1.95 | 138160 | 6739 | 60 | 3888 | 250 | 0 | 0 | logfile |
✔ | 7NHX | 12342 | 2023-12-16 | 2021-02-11 | 3.23 | 3.85 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 15.12 | 0.01 | 1.869 | 9.83 | 0.00 | 4.7 | 95.2 | 0.1 | -2.68 | 0.84 | 0.78 | 2.44 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 16.06 | 0.00 | 1.990 | 8.94 | 0.05 | 4.1 | 95.8 | 0.0 | 0.27 | 1.14 | 0.84 | 0.83 | 2.28 | 34661 | 2121 | 5 | 23 | 0 | 0 | 17149 | logfile |
✔ | 7TKH | 25969 | 2023-12-12 | 2022-01-17 | 4.4 | 7.29 | 4.45 | 4.2 | 0.019 | 2.19 | 0.0 | 0.00 | 6.81 | 0.01 | 2.385 | 0.08 | 0.00 | 3.9 | 94.7 | 1.4 | -0.35 | 0.59 | 0.62 | — | 4.2 | 0.018 | 1.32 | 0.0 | 0.00 | 7.42 | 0.01 | 1.974 | 32.32 | 0.00 | 15.1 | 84.5 | 0.3 | -2.28 | 1.70 | 0.83 | 0.84 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BR2 | 16197 | 2023-12-10 | 2022-11-22 | 2.9 | 2.85 | 2.83 | 2.9 | 0.008 | 0.56 | 0.0 | 0.04 | 18.03 | 0.02 | 2.117 | 11.68 | 0.80 | 3.0 | 97.0 | 0.0 | -2.85 | 0.62 | 0.85 | 3.35 | 2.9 | 0.004 | 0.55 | 0.0 | 0.04 | 19.07 | 0.00 | 2.182 | 6.44 | 2.12 | 1.6 | 98.4 | 0.0 | -0.52 | 0.72 | 0.58 | 0.87 | 3.44 | 15574 | 1866 | 21 | 40 | 18 | 120 | 0 | logfile |
✔ | 7XSL | 33426 | 2023-12-09 | 2022-05-14 | 3.84 | 4.65 | 3.83 | 3.7 | 0.002 | 0.47 | 0.0 | 0.02 | 23.54 | 0.00 | 1.935 | 8.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.77 | — | 3.8 | 0.007 | 0.70 | 0.0 | 0.04 | 24.74 | 0.01 | 1.811 | 33.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.00 | 0.92 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7M4U | 23666 | 2023-12-07 | 2021-03-22 | 2.71 | 1.78 | — | 1.6 | 0.006 | 0.58 | 2.0 | 0.04 | 21.77 | 0.02 | 1.771 | 4.42 | 0.20 | 3.1 | 96.7 | 0.2 | 1.08 | 0.79 | 0.76 | 3.70 | 1.6 | 0.003 | 0.69 | 0.0 | 0.04 | 21.97 | 0.01 | 1.791 | 5.90 | 2.00 | 3.2 | 96.5 | 0.2 | 0.89 | 0.91 | 0.82 | 0.81 | 3.51 | 51764 | 2386 | 27 | 1528 | 84 | 191 | 0 | logfile |
✔ | 8F1J | 28785 | 2023-12-15 | 2022-11-05 | 2.6 | 3.66 | 2.67 | 3.1 | 0.002 | 0.44 | 0.0 | 0.04 | 13.90 | 0.00 | 2.096 | 4.27 | 0.98 | 2.2 | 97.8 | 0.0 | 0.89 | 0.90 | 0.85 | 2.55 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 15.61 | 0.00 | 2.053 | 4.89 | 0.73 | 2.6 | 97.4 | 0.0 | 1.27 | 1.61 | 0.88 | 0.84 | 2.20 | 30829 | 3688 | 13 | 94 | 3 | 7 | 0 | logfile |
✔ | 8A1Y | 15093 | 2023-12-15 | 2022-06-02 | 3.3 | 3.70 | 3.51 | 3.7 | 0.004 | 0.54 | 0.0 | 0.04 | 17.51 | 0.00 | 2.049 | 3.87 | 0.06 | 2.0 | 98.0 | 0.0 | 1.28 | 0.59 | 0.75 | 1.56 | 3.7 | 0.004 | 0.53 | 0.0 | 0.04 | 16.25 | 0.00 | 0.801 | 7.96 | 0.26 | 3.2 | 96.8 | 0.0 | 0.45 | 1.47 | 0.63 | 0.80 | 1.53 | 30045 | 1920 | 11 | 0 | 14 | 0 | 14864 | logfile |
✔ | 7KAP | 22779 | 2023-12-09 | 2020-10-01 | 4.1 | 4.58 | 4.09 | 4.2 | 0.003 | 0.55 | 0.0 | 0.04 | 11.24 | 0.00 | 2.205 | 8.00 | 0.00 | 2.3 | 97.7 | 0.0 | -1.05 | 0.62 | 0.83 | — | 4.2 | 0.003 | 0.60 | 0.0 | 0.04 | 12.31 | 0.00 | 2.187 | 9.26 | 0.00 | 2.9 | 97.1 | 0.0 | 2.08 | 0.64 | 0.64 | 0.85 | — | 10715 | 1342 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 6S0X | 10076 | 2023-12-15 | 2019-06-18 | 2.425 | 2.50 | — | 2.5 | 0.021 | 2.13 | 0.0 | 0.11 | 25.91 | 0.01 | 0.917 | 12.73 | 19.66 | 9.7 | 90.2 | 0.1 | -4.36 | 0.60 | 0.63 | 2.41 | 2.5 | 0.006 | 0.96 | 0.0 | 0.05 | 24.99 | 0.01 | 1.509 | 18.82 | 6.46 | 8.1 | 91.9 | 0.0 | -1.98 | 0.68 | 0.63 | 0.64 | 2.39 | 140672 | 5589 | 53 | 4559 | 1 | 0 | 0 | logfile |
✔ | 8G6Y | 29788 | 2023-12-15 | 2023-02-16 | 2.09 | 1.85 | 2.01 | 1.9 | 0.007 | 0.89 | 0.0 | 0.05 | 22.46 | 0.03 | 1.446 | 5.72 | 3.72 | 3.5 | 96.3 | 0.2 | -1.60 | 0.73 | 0.86 | 6.08 | 2.0 | 0.006 | 0.90 | 0.0 | 0.04 | 22.41 | 0.01 | 1.694 | 5.68 | 2.56 | 3.6 | 96.3 | 0.1 | -0.21 | 1.19 | 0.73 | 0.89 | 5.99 | 93683 | 3175 | 69 | 3037 | 250 | 3460 | 0 | logfile |
✔ | 8A57 | 15161 | 2023-12-15 | 2022-06-14 | 2.3 | 1.87 | 2.34 | 2.1 | 0.011 | 1.72 | 2.0 | 0.12 | 22.14 | 0.02 | 1.972 | 3.26 | 2.49 | 7.1 | 91.7 | 1.2 | -3.32 | 0.61 | 0.75 | 3.99 | 2.0 | 0.005 | 0.81 | 0.0 | 0.04 | 22.58 | 0.01 | 1.797 | 9.64 | 3.13 | 5.0 | 94.9 | 0.1 | -1.02 | 1.27 | 0.68 | 0.77 | 3.93 | 92760 | 3527 | 39 | 3022 | 167 | 0 | 0 | logfile |
✔ | 7SD0 | 25044 | 2023-12-10 | 2021-09-29 | 2.95 | 3.72 | 2.97 | 3.5 | 0.007 | 0.97 | 3.0 | 0.07 | 13.55 | 0.00 | 1.813 | 11.57 | 0.91 | 5.3 | 94.7 | 0.0 | -2.03 | 0.79 | 0.74 | 1.81 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 15.49 | 0.00 | 1.961 | 13.82 | 1.48 | 4.1 | 95.9 | 0.0 | -1.42 | 0.51 | 0.80 | 0.75 | 1.56 | 7729 | 965 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZXA | 11516 | 2023-12-08 | 2020-07-29 | 2.38 | 2.34 | — | 2.3 | 0.019 | 3.61 | 0.0 | 0.07 | 21.62 | 0.01 | 2.324 | 10.63 | 5.21 | 12.8 | 87.2 | 0.0 | -1.00 | 0.75 | 0.90 | 5.13 | 2.3 | 0.004 | 1.89 | 0.0 | 0.05 | 21.35 | 0.01 | 2.285 | 11.55 | 2.83 | 11.8 | 88.2 | 0.0 | 0.88 | 0.73 | 0.75 | 0.88 | 3.97 | 8442 | 791 | 28 | 0 | 35 | 0 | 0 | logfile |
✔ | 7KAQ | 22780 | 2023-12-09 | 2020-10-01 | 4.0 | 4.57 | 4.07 | 4.2 | 0.003 | 0.52 | 0.0 | 0.04 | 11.53 | 0.00 | 2.158 | 7.51 | 0.00 | 2.3 | 97.7 | 0.0 | -1.00 | 0.62 | 0.83 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 13.96 | 0.00 | 2.144 | 9.08 | 0.27 | 2.4 | 97.6 | 0.0 | 1.79 | 0.62 | 0.63 | 0.84 | — | 10753 | 1346 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 7oJL | 12955 | 2023-12-10 | 2021-05-16 | 3.3 | 3.67 | 3.30 | 3.4 | 0.003 | 0.46 | 0.0 | 0.04 | 12.89 | 0.00 | 1.827 | 7.40 | 2.98 | 8.2 | 91.8 | 0.1 | -2.78 | 0.86 | 0.82 | 2.82 | 3.4 | 0.002 | 0.50 | 0.0 | 0.04 | 14.73 | 0.00 | 2.163 | 8.62 | 0.15 | 6.9 | 93.0 | 0.1 | 0.31 | 1.00 | 0.89 | 0.88 | 2.45 | 12842 | 1498 | 4 | 33 | 1 | 0 | 0 | logfile |
✔ | 7YPX | 34017 | 2023-12-08 | 2022-08-04 | 3.12 | 4.18 | 3.16 | 3.7 | 0.004 | 0.57 | 0.0 | 0.04 | 10.61 | 0.00 | 2.092 | 12.71 | 0.00 | 3.7 | 96.3 | 0.0 | -0.23 | 0.91 | 0.85 | 2.88 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 12.46 | 0.00 | 2.153 | 15.77 | 0.35 | 3.2 | 96.8 | 0.0 | -0.40 | 1.13 | 0.92 | 0.86 | 2.41 | 8808 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RLC | 24525 | 2023-12-16 | 2021-07-23 | 3.2 | 3.75 | — | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 10.11 | 0.00 | 0.891 | 7.51 | 0.00 | 5.3 | 94.4 | 0.3 | -1.71 | 0.83 | 0.79 | 1.78 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 11.53 | 0.00 | 1.942 | 5.63 | 0.03 | 4.2 | 95.8 | 0.0 | -0.12 | 1.26 | 0.89 | 0.88 | 2.33 | 34980 | 4422 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 8iZY | 35877 | 2023-12-11 | 2023-04-09 | 2.5 | 2.54 | 2.78 | 2.6 | 0.003 | 0.53 | 0.0 | 0.03 | 17.63 | 0.00 | 1.956 | 7.21 | 0.71 | 3.2 | 96.8 | 0.0 | 2.64 | 0.48 | 0.78 | 2.29 | 2.6 | 0.003 | 0.53 | 0.0 | 0.03 | 17.53 | 0.00 | 2.067 | 6.85 | 2.25 | 3.1 | 96.9 | 0.0 | 1.95 | 1.53 | 0.51 | 0.80 | 2.61 | 16776 | 1004 | 8 | 0 | 8 | 0 | 8360 | logfile |