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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW4 | 9540 | 2023-08-12 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-08-18 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-08-18 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 8GVC | 34290 | 2023-08-10 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7R8B | 24314 | 2023-08-12 | 2021-06-26 | 3.1 | 3.48 | — | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.48 | 0.00 | 2.103 | 6.66 | 1.94 | 3.5 | 96.5 | 0.0 | -1.73 | 0.67 | 0.85 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10868 | 1371 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6WB0 | 21583 | 2023-08-10 | 2020-03-26 | 4.2 | 4.26 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 11.69 | 0.00 | 2.131 | 11.89 | 0.81 | 4.1 | 95.9 | 0.0 | -4.46 | 0.79 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8518 | 948 | 4 | 77 | 0 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-08-09 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7P5W | 13203 | 2023-08-25 | 2021-07-15 | 3.5 | 2.99 | 3.45 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 11.73 | 0.00 | 2.131 | 10.96 | 3.75 | 4.4 | 95.6 | 0.0 | -0.37 | 0.72 | 0.70 | 1.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41250 | 5028 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7o85 | 12761 | 2023-08-20 | 2021-04-14 | 3.3 | 3.50 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.51 | 0.00 | 1.470 | 7.44 | 0.00 | 3.3 | 96.7 | 0.0 | -0.25 | 0.71 | 0.75 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28525 | 3843 | 28 | 0 | 14 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-08-12 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-08-13 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-08-12 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JPT | 22422 | 2023-08-11 | 2020-08-09 | 3.2 | 3.54 | 3.50 | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 13.65 | 0.00 | 2.267 | 8.72 | 3.48 | 6.8 | 93.2 | 0.1 | -4.02 | 0.66 | 0.71 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10220 | 1327 | 3 | 0 | 5 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-08-11 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2023-08-12 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2023-08-14 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-08-18 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7VGS | 31978 | 2023-08-13 | 2021-09-18 | 2.8 | 3.28 | — | 3.3 | 0.002 | 0.66 | 0.0 | 0.04 | 12.19 | 0.01 | 2.230 | 9.89 | 0.38 | 7.0 | 93.0 | 0.0 | -1.16 | 0.67 | 0.75 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9700 | 1254 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZJE | 14746 | 2023-08-15 | 2022-04-10 | 3.12 | 3.70 | 3.28 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 11.99 | 0.00 | 2.254 | 7.29 | 0.19 | 8.3 | 91.1 | 0.5 | 0.64 | 0.66 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19284 | 2380 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F1K | 28791 | 2023-08-21 | 2022-11-05 | 2.8 | 3.72 | 2.83 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 14.90 | 0.00 | 2.130 | 4.40 | 1.30 | 2.3 | 97.7 | 0.0 | 0.58 | 0.88 | 0.82 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30854 | 3689 | 14 | 95 | 3 | 10 | 0 | logfile |