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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7MT3 | 23975 | 2023-08-31 | 2021-05-12 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.52 | — | — | 4.06 | 2.9 | 0.007 | 0.67 | 0.0 | 0.04 | 14.24 | 0.01 | 1.022 | 6.18 | 1.92 | 6.5 | 93.4 | 0.1 | -1.21 | — | 0.84 | 0.87 | 3.14 | 147942 | 5616 | 68 | 4835 | 441 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-08-10 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-08-29 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 3JCJ | 6559 | 2023-08-31 | 2015-12-18 | 3.7 | 3.96 | — | 3.8 | 0.007 | 1.05 | 18.0 | 0.10 | 12.45 | 0.01 | 1.344 | 2.06 | 0.39 | 9.2 | 89.0 | 1.8 | -3.55 | 0.80 | 0.75 | 1.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148347 | 6249 | 82 | 4594 | 197 | 837 | 0 | logfile |
✘ | 5GL0 | 9520 | 2023-08-11 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 7XUJ | 33471 | 2023-08-12 | 2022-05-18 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11296 | 1406 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 6RWN | 10043 | 2023-08-15 | 2019-06-05 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18346 | 2076 | 26 | 86 | 16 | 8 | 0 | logfile |
✘ | 6PLR | 20373 | 2023-08-13 | 2019-07-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14685 | 1735 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 7KU7 | 23035 | 2023-08-14 | 2020-11-24 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 16 | 68 | 8 | 0 | 0 | logfile |
✘ | 8ERA | 28551 | 2023-08-20 | 2022-10-11 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29054 | 3644 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2023-08-11 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6U8Q | 20689 | 2023-08-16 | 2019-09-05 | 4.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21129 | 2442 | 18 | 96 | 6 | 0 | 0 | logfile |
✘ | 6PLU | 20376 | 2023-08-13 | 2019-07-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14665 | 1720 | 15 | 0 | 80 | 0 | 0 | logfile |
✘ | 7EWK | 31350 | 2023-08-24 | 2021-05-25 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32765 | 3110 | 27 | 0 | 196 | 0 | 0 | logfile |
✘ | 6PLS | 20374 | 2023-08-13 | 2019-07-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14610 | 1720 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 7WDB | 32436 | 2023-08-17 | 2021-12-21 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22400 | 2660 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 6PLV | 20377 | 2023-08-13 | 2019-07-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14655 | 1725 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 6VXK | 21442 | 2023-08-15 | 2020-02-22 | 3.1 | 3.57 | — | 3.2 | 0.011 | 0.84 | 0.0 | 0.05 | 14.73 | 0.00 | 2.122 | 15.37 | 8.05 | 10.5 | 89.5 | 0.0 | -3.69 | 0.86 | 0.88 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17418 | 2254 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2023-08-11 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✘ | 7K0K | 22600 | 2023-08-10 | 2020-09-04 | 2.6 | 2.96 | — | 2.9 | 0.006 | 0.68 | 0.0 | 0.05 | 12.44 | 0.00 | 1.915 | 7.43 | 0.00 | 2.2 | 97.8 | 0.0 | 0.53 | 0.68 | 0.85 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7615 | 964 | 4 | 0 | 2 | 0 | 0 | logfile |