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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8GA8 | 29892 | 2023-08-17 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 6XXD | 10647 | 2023-08-13 | 2020-01-27 | 3.22 | 2.31 | — | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 11.45 | 0.00 | 2.647 | 2.40 | 0.00 | 5.7 | 94.3 | 0.0 | -2.51 | 0.70 | 0.68 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14896 | 2000 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EX7 | 28653 | 2023-08-09 | 2022-10-24 | 3.53 | 3.77 | 3.48 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 13.31 | 0.01 | 2.211 | 6.36 | 0.00 | 4.2 | 95.8 | 0.0 | 0.68 | 0.59 | 0.76 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3177 | 414 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-08-14 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 7YSW | 34084 | 2023-08-12 | 2022-08-13 | 3.03 | 3.51 | 3.06 | 3.4 | 0.007 | 1.01 | 0.0 | 0.20 | 16.78 | 0.00 | 1.948 | 10.59 | 4.77 | 6.4 | 93.6 | 0.0 | -1.74 | 0.76 | 0.80 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12407 | 1517 | 7 | 0 | 12 | 0 | 0 | logfile |
✘ | 8FoA | 29343 | 2023-08-16 | 2022-12-30 | 2.66 | 2.96 | 2.81 | 2.9 | 0.023 | 1.52 | 0.0 | 0.53 | 17.58 | 0.01 | 2.298 | 7.30 | 0.42 | 5.2 | 94.7 | 0.0 | -5.28 | 0.66 | 0.84 | 4.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21287 | 2448 | 8 | 0 | 53 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2023-08-09 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8C95 | 16502 | 2023-08-25 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 8HH6 | 34753 | 2023-08-18 | 2022-11-16 | 2.9 | 3.16 | 3.03 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 13.04 | 0.00 | 2.002 | 5.07 | 0.00 | 2.3 | 97.7 | 0.0 | 1.53 | 0.80 | 0.89 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24277 | 3129 | 13 | 0 | 13 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-08-11 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DUL | 27722 | 2023-08-13 | 2022-07-27 | 4.17 | 4.34 | 4.24 | 4.7 | 0.005 | 1.04 | 0.0 | 0.07 | 13.22 | 0.02 | 2.317 | 6.11 | 0.06 | 5.3 | 94.7 | 0.0 | -2.03 | 0.56 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14203 | 1802 | 15 | 0 | 10 | 0 | 0 | logfile |
✘ | 8FoB | 29344 | 2023-08-16 | 2022-12-30 | 2.71 | 2.96 | 2.77 | 3.0 | 0.024 | 1.57 | 0.0 | 0.54 | 17.44 | 0.01 | 2.073 | 8.34 | 0.39 | 8.3 | 91.7 | 0.0 | -5.44 | 0.60 | 0.72 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20390 | 2376 | 12 | 0 | 46 | 52 | 0 | logfile |
✘ | 7Yi2 | 33849 | 2023-08-12 | 2022-07-14 | 3.4 | 2.75 | 3.37 | 2.7 | 0.003 | 0.59 | 0.0 | 0.04 | 18.17 | 0.01 | 2.062 | 9.71 | 0.23 | 6.9 | 93.1 | 0.0 | -0.99 | 0.75 | 0.77 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12140 | 1397 | 9 | 33 | 5 | 0 | 0 | logfile |
✘ | 8EX4 | 28650 | 2023-08-09 | 2022-10-24 | 2.93 | 3.19 | 2.90 | 3.2 | 0.005 | 0.73 | 0.0 | 0.04 | 13.95 | 0.00 | 2.165 | 9.46 | 0.00 | 1.9 | 98.1 | 0.0 | 0.40 | 0.59 | 0.80 | 4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3226 | 417 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7R47 | 14282 | 2023-08-16 | 2022-02-08 | 2.3 | 2.29 | — | 2.3 | 0.008 | 0.81 | 0.0 | 0.85 | 17.14 | 0.01 | 1.921 | 2.60 | 1.15 | 2.1 | 97.9 | 0.0 | 0.85 | 0.73 | 0.90 | 6.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68578 | 8089 | 116 | 0 | 51 | 1836 | 0 | logfile |
✘ | 8EU9 | 28609 | 2023-08-20 | 2022-10-18 | 3.48 | 2.61 | 3.59 | 2.9 | 0.006 | 1.06 | 0.0 | 0.06 | 17.26 | 0.01 | 1.528 | 5.67 | 0.00 | 3.6 | 96.4 | 0.0 | -1.81 | 0.73 | 0.77 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28517 | 3660 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 8Gi9 | 40063 | 2023-08-10 | 2023-03-13 | 2.84 | 3.09 | 2.82 | 3.1 | 0.009 | 1.11 | 0.0 | 0.10 | 15.66 | 0.00 | 1.878 | 8.12 | 0.00 | 4.6 | 95.4 | 0.0 | 1.20 | 0.57 | 0.79 | 4.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6852 | 720 | 3 | 0 | 39 | 45 | 0 | logfile |
✘ | 8HW4 | 35050 | 2023-08-12 | 2022-12-28 | 3.52 | 3.89 | 3.62 | 3.8 | 0.033 | 1.39 | 0.0 | 0.17 | 14.97 | 0.01 | 2.142 | 14.67 | 0.09 | 8.2 | 91.8 | 0.0 | -2.38 | 0.67 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10746 | 1364 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7oZS | 13134 | 2023-08-12 | 2021-06-28 | 3.5 | 4.00 | — | 3.6 | 0.004 | 0.79 | 0.0 | 0.05 | 13.79 | 0.01 | 2.282 | 3.82 | 0.29 | 3.7 | 96.3 | 0.0 | -1.44 | 0.89 | 0.85 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12770 | 1314 | 7 | 119 | 23 | 0 | 0 | logfile |
✘ | 6XXE | 10648 | 2023-08-12 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |