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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8SL0 | 40570 | 2023-08-09 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-08-11 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2023-08-09 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EX7 | 28653 | 2023-08-09 | 2022-10-24 | 3.53 | 3.77 | 3.48 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 13.31 | 0.01 | 2.211 | 6.36 | 0.00 | 4.2 | 95.8 | 0.0 | 0.68 | 0.59 | 0.76 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3177 | 414 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZNL | 14808 | 2023-08-21 | 2022-04-21 | 3.45 | 3.67 | 3.55 | 3.4 | 0.005 | 0.78 | 0.0 | 0.04 | 11.78 | 0.01 | 2.171 | 7.60 | 6.04 | 6.6 | 93.1 | 0.3 | -2.22 | 0.37 | 0.21 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84821 | 11173 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PHP | 13424 | 2023-08-10 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |
✘ | 7AMY | 11827 | 2023-08-18 | 2020-10-09 | 3.75 | 3.87 | 3.71 | 3.8 | 0.010 | 0.89 | 0.0 | 0.05 | 14.93 | 0.00 | 2.177 | 20.18 | 0.66 | 13.8 | 85.9 | 0.3 | -5.40 | 0.82 | 0.86 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24849 | 3177 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EWQ | 31361 | 2023-08-25 | 2021-05-25 | 3.5 | 3.98 | — | 3.7 | 0.006 | 0.78 | 0.0 | 0.04 | 15.24 | 0.00 | 0.473 | 31.00 | 0.00 | 6.7 | 93.3 | 0.0 | -3.42 | 0.74 | 0.73 | 2.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40144 | 4862 | 26 | 78 | 0 | 0 | 0 | logfile |
✘ | 8C95 | 16502 | 2023-08-25 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 7YQM | 34029 | 2023-08-09 | 2022-08-08 | 2.89 | 3.15 | 2.89 | 3.2 | 0.005 | 0.58 | 0.0 | 0.05 | 11.88 | 0.00 | 2.294 | 1.86 | 0.17 | 4.7 | 95.3 | 0.0 | -0.02 | 0.67 | 0.78 | 4.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5656 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7U5U | 26359 | 2023-08-16 | 2022-03-02 | 3.16 | 3.37 | 3.21 | 3.4 | 0.007 | 0.88 | 0.0 | 0.06 | 15.34 | 0.01 | 2.279 | 5.12 | 0.00 | 5.5 | 94.5 | 0.0 | -5.67 | 0.67 | 0.77 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10035 | 1283 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-08-10 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 8DGJ | 27427 | 2023-08-13 | 2022-06-23 | 4.02 | 4.32 | 4.05 | 4.1 | 0.007 | 1.24 | 2.0 | 0.06 | 14.25 | 0.01 | 2.213 | 11.07 | 0.13 | 7.4 | 92.3 | 0.3 | -2.71 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13574 | 1689 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DRA | 27675 | 2023-08-11 | 2022-07-20 | 3.98 | 4.17 | 3.98 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 15.74 | 0.01 | 2.257 | 11.58 | 0.35 | 5.4 | 94.6 | 0.0 | -3.01 | 0.63 | 0.69 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 1218 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-08-17 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-08-16 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ST6 | 25420 | 2023-08-31 | 2021-11-12 | 3.0 | 3.74 | 3.18 | 3.0 | 0.008 | 0.96 | 1.0 | 0.08 | 15.23 | 0.01 | 1.404 | 9.99 | 0.71 | 10.6 | 89.0 | 0.4 | -4.95 | 0.90 | 0.84 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147982 | 5721 | 58 | 4811 | 0 | 0 | 0 | logfile |
✘ | 7ZGK | 14708 | 2023-08-13 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YVL | 34131 | 2023-08-09 | 2022-08-19 | 3.3 | 3.44 | 3.21 | 3.4 | 0.011 | 1.16 | 5.0 | 0.07 | 12.98 | 0.01 | 2.155 | 18.66 | 1.42 | 9.0 | 90.6 | 0.5 | -4.93 | 0.57 | 0.77 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3224 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2023-08-09 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |