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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7MT3 | 23975 | 2023-08-31 | 2021-05-12 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.52 | — | — | 4.06 | 2.9 | 0.007 | 0.67 | 0.0 | 0.04 | 14.24 | 0.01 | 1.022 | 6.18 | 1.92 | 6.5 | 93.4 | 0.1 | -1.21 | — | 0.84 | 0.87 | 3.14 | 147942 | 5616 | 68 | 4835 | 441 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-08-29 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-08-10 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-08-18 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 6oLL | 20116 | 2023-08-16 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2023-08-17 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✘ | 7XJi | 33228 | 2023-08-10 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.86 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 5M5W | 3446 | 2023-08-23 | 2016-10-23 | 3.8 | 3.89 | — | 3.9 | 0.003 | 0.62 | 4.0 | 0.05 | 12.18 | 0.00 | 1.405 | 11.80 | 1.35 | 4.3 | 95.6 | 0.1 | -4.15 | 0.68 | 0.68 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34780 | 4271 | 21 | 43 | 7 | 0 | 0 | logfile |
✘ | 7DXA | 30902 | 2023-08-14 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15162 | 1629 | 23 | 0 | 50 | 0 | 0 | logfile |
✘ | 7VFF | 31951 | 2023-08-12 | 2021-09-13 | 4.1 | 3.76 | 3.90 | 4.0 | 0.007 | 0.72 | 0.0 | 0.05 | 13.87 | 0.00 | 2.334 | 2.40 | 0.41 | 3.6 | 96.4 | 0.0 | -0.82 | 0.79 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12579 | 1581 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JA8 | 6338 | 2023-08-20 | 2015-05-09 | 3.8 | 3.83 | — | 3.8 | 0.014 | 1.57 | 0.0 | 0.06 | 10.98 | 0.01 | 1.749 | 29.23 | 0.37 | 7.9 | 91.0 | 1.1 | -4.26 | 0.68 | 0.80 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29838 | 3786 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 6WTi | 21897 | 2023-08-11 | 2020-05-02 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9980 | 1207 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 5T4D | 8354 | 2023-08-13 | 2016-08-29 | 3.0 | 3.12 | 2.96 | 3.1 | 0.010 | 0.81 | 0.0 | 0.05 | 8.91 | 0.00 | 2.120 | 12.34 | 0.26 | 4.4 | 95.6 | 0.0 | -2.69 | 0.75 | 0.79 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14876 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6WHA | 21669 | 2023-08-10 | 2020-04-07 | 3.36 | 3.16 | — | 3.4 | 0.012 | 1.20 | 2.0 | 0.08 | 13.68 | 0.01 | 2.284 | 6.97 | 2.99 | 4.1 | 95.9 | 0.0 | -0.19 | 0.78 | 0.85 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7888 | 1074 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6R0Y | 4700 | 2023-08-25 | 2019-03-13 | 3.9 | 3.89 | — | 3.9 | 0.009 | 1.08 | 0.0 | 0.06 | 10.27 | 0.01 | 2.169 | 5.26 | 0.31 | 7.3 | 92.7 | 0.0 | -4.22 | 0.84 | 0.84 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40169 | 5845 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 6RAJ | 4777 | 2023-08-11 | 2019-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10198 | 1282 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2023-08-13 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7o37 | 12702 | 2023-08-26 | 2021-04-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48610 | 5970 | 52 | 0 | 43 | 0 | 0 | logfile |
✘ | 7CFS | 30346 | 2023-08-11 | 2020-06-28 | 3.56 | 3.72 | — | 3.7 | 0.008 | 0.94 | 0.0 | 0.06 | 15.94 | 0.01 | 1.835 | 5.64 | 0.60 | 5.9 | 94.1 | 0.0 | -5.35 | 0.79 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9974 | 1278 | 6 | 0 | 10 | 0 | 0 | logfile |
✘ | 6HWH | 0289 | 2023-08-25 | 2018-10-12 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40632 | 4916 | 40 | 0 | 420 | 0 | 0 | logfile |