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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GYS | 0096 | 2024-02-23 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.42 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.04 | 15.76 | 0.00 | 1.219 | 24.37 | 0.00 | 9.6 | 90.3 | 0.1 | -1.35 | 1.28 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2023-06-28 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.13 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 15.64 | 0.01 | 1.149 | 29.08 | 0.00 | 10.6 | 89.3 | 0.0 | -1.57 | 1.29 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2023-10-12 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 8.80 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.05 | 13.25 | 0.00 | 2.132 | 16.42 | 0.23 | 5.9 | 94.1 | 0.0 | -0.94 | 2.23 | 0.89 | 0.82 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2023-12-13 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 9.48 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.004 | 0.71 | 0.0 | 0.04 | 13.29 | 0.00 | 2.127 | 14.91 | 0.27 | 5.7 | 94.3 | 0.0 | -0.53 | 2.21 | 0.88 | 0.82 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2024-02-19 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 9.48 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.30 | 0.00 | 2.129 | 13.13 | 1.75 | 5.0 | 95.0 | 0.0 | -0.54 | 0.86 | 0.88 | 0.81 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2024-03-23 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.42 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.04 | 15.76 | 0.00 | 1.219 | 24.37 | 0.00 | 9.6 | 90.3 | 0.1 | -1.35 | 1.28 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2023-07-11 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 8.80 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.05 | 13.25 | 0.00 | 2.132 | 16.42 | 0.23 | 5.9 | 94.1 | 0.0 | -0.94 | 2.23 | 0.89 | 0.82 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2023-08-18 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 8.80 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.05 | 13.25 | 0.00 | 2.132 | 16.42 | 0.23 | 5.9 | 94.1 | 0.0 | -0.94 | 2.23 | 0.89 | 0.82 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2023-11-18 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 8.80 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.05 | 13.25 | 0.00 | 2.132 | 16.42 | 0.23 | 5.9 | 94.1 | 0.0 | -0.94 | 2.23 | 0.89 | 0.82 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2023-07-13 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.34 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.83 | 0.0 | 0.05 | 17.35 | 0.00 | 2.131 | 20.15 | 0.74 | 6.2 | 93.3 | 0.5 | -0.57 | 1.54 | 0.79 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2023-08-19 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.34 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.83 | 0.0 | 0.05 | 17.35 | 0.00 | 2.131 | 20.15 | 0.74 | 6.2 | 93.3 | 0.5 | -0.57 | 1.54 | 0.79 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2023-10-13 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.34 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.83 | 0.0 | 0.05 | 17.35 | 0.00 | 2.131 | 20.15 | 0.74 | 6.2 | 93.3 | 0.5 | -0.57 | 1.54 | 0.79 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2023-11-19 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.34 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.83 | 0.0 | 0.05 | 17.35 | 0.00 | 2.131 | 20.15 | 0.74 | 6.2 | 93.3 | 0.5 | -0.57 | 1.54 | 0.79 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2023-12-14 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.78 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.003 | 0.81 | 0.0 | 0.05 | 17.39 | 0.00 | 2.120 | 20.00 | 0.50 | 6.7 | 92.8 | 0.5 | -0.54 | 1.54 | 0.79 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2024-02-20 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.78 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 17.66 | 0.00 | 2.110 | 20.40 | 2.92 | 6.6 | 92.9 | 0.5 | -0.64 | 1.55 | 0.80 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2024-03-19 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 9.48 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.30 | 0.00 | 2.129 | 13.13 | 1.75 | 5.0 | 95.0 | 0.0 | -0.54 | 0.86 | 0.88 | 0.81 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2024-03-20 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.78 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 17.66 | 0.00 | 2.110 | 20.40 | 2.92 | 6.6 | 92.9 | 0.5 | -0.64 | 1.55 | 0.80 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2023-06-23 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.34 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.83 | 0.0 | 0.05 | 17.35 | 0.00 | 2.131 | 20.15 | 0.74 | 6.2 | 93.3 | 0.5 | -0.57 | 1.54 | 0.79 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2023-08-24 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.13 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 15.64 | 0.01 | 1.149 | 29.08 | 0.00 | 10.6 | 89.3 | 0.0 | -1.57 | 1.29 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2023-07-17 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.13 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 15.64 | 0.01 | 1.149 | 29.08 | 0.00 | 10.6 | 89.3 | 0.0 | -1.57 | 1.29 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |