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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6RKo | 4908 | 2024-01-18 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 6RKo | 4908 | 2023-06-15 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 7A94 | 11684 | 2023-06-25 | 2020-09-01 | 3.9 | 4.30 | 4.00 | 4.0 | 0.007 | 0.87 | 3.0 | 0.06 | 13.58 | 0.01 | 2.085 | 3.58 | 0.87 | 6.8 | 93.2 | 0.0 | -1.82 | 0.89 | 0.84 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30463 | 3825 | 8 | 0 | 24 | 0 | 0 | logfile |
✘ | 6SHT | 10205 | 2023-12-16 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✘ | 6RKo | 4908 | 2024-02-13 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 6RKo | 4908 | 2024-03-11 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 8HWB | 35052 | 2024-02-19 | 2022-12-29 | 3.9 | 4.06 | 3.80 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.50 | 0.00 | 1.900 | 9.80 | 0.59 | 3.7 | 96.2 | 0.0 | -1.13 | 0.80 | 0.84 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25740 | 3147 | 13 | 6 | 10 | 0 | 0 | logfile |
✘ | 8HWB | 35052 | 2024-03-20 | 2022-12-29 | 3.9 | 4.06 | 3.80 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.50 | 0.00 | 1.900 | 9.80 | 0.59 | 3.7 | 96.2 | 0.0 | -1.13 | 0.80 | 0.84 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25740 | 3147 | 13 | 6 | 10 | 0 | 0 | logfile |
✘ | 6SHT | 10205 | 2023-11-22 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-12-11 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 8.17 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 11.03 | 0.00 | 2.193 | 13.10 | 0.05 | 3.3 | 96.7 | 0.0 | -0.21 | 1.32 | 0.81 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✘ | 6CiJ | 7480 | 2023-12-12 | 2018-02-24 | 3.9 | 4.19 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 19.65 | 0.00 | 2.055 | 13.51 | 2.25 | 3.6 | 96.4 | 0.0 | -2.66 | 0.90 | 0.85 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20413 | 2045 | 13 | 212 | 4 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-08-14 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 7.79 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 11.21 | 0.00 | 2.197 | 11.45 | 0.05 | 3.6 | 96.4 | 0.0 | 0.02 | 1.31 | 0.82 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-11-16 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 7.79 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 11.21 | 0.00 | 2.197 | 11.45 | 0.05 | 3.6 | 96.4 | 0.0 | 0.02 | 1.31 | 0.82 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-07-08 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 7.79 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 11.21 | 0.00 | 2.197 | 11.45 | 0.05 | 3.6 | 96.4 | 0.0 | 0.02 | 1.31 | 0.82 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-06-19 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 7.79 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 11.21 | 0.00 | 2.197 | 11.45 | 0.05 | 3.6 | 96.4 | 0.0 | 0.02 | 1.31 | 0.82 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2024-03-17 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 8.17 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 11.31 | 0.00 | 2.176 | 11.66 | 0.05 | 3.8 | 96.2 | 0.0 | -0.24 | 1.32 | 0.81 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-10-08 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 7.79 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 11.21 | 0.00 | 2.197 | 11.45 | 0.05 | 3.6 | 96.4 | 0.0 | 0.02 | 1.31 | 0.82 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2024-02-17 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 8.17 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 11.31 | 0.00 | 2.176 | 11.66 | 0.05 | 3.8 | 96.2 | 0.0 | -0.24 | 1.32 | 0.81 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✘ | 6RKo | 4908 | 2023-08-10 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 6RKo | 4908 | 2023-07-04 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |