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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HV9 | 0288 | 2024-02-24 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.30 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 13.38 | 0.00 | 2.088 | 16.17 | 0.00 | 8.2 | 91.7 | 0.1 | -1.72 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 8UDG | 42149 | 2024-03-18 | 2023-09-28 | 4.98 | 6.27 | 5.10 | 5.0 | 0.004 | 0.65 | 0.0 | 0.04 | 11.43 | 0.00 | 2.089 | 3.07 | 0.00 | 2.8 | 97.1 | 0.2 | -0.18 | 0.86 | 0.74 | — | 5.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.75 | 0.00 | 1.953 | 12.44 | 0.00 | 4.9 | 94.9 | 0.2 | 0.67 | 1.04 | 0.87 | 0.76 | — | 19524 | 1317 | 7 | 0 | 0 | 0 | 9627 | logfile |
✔ | 6HV9 | 0288 | 2023-08-26 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.30 | 0.00 | 2.086 | 16.13 | 0.02 | 8.1 | 91.8 | 0.1 | -1.67 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 6HV9 | 0288 | 2023-06-30 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.30 | 0.00 | 2.086 | 16.13 | 0.02 | 8.1 | 91.8 | 0.1 | -1.67 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 6HV9 | 0288 | 2024-03-25 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.30 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 13.38 | 0.00 | 2.088 | 16.17 | 0.00 | 8.2 | 91.7 | 0.1 | -1.72 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 6HV9 | 0288 | 2023-10-20 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.30 | 0.00 | 2.086 | 16.13 | 0.02 | 8.1 | 91.8 | 0.1 | -1.67 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 8UDG | 42149 | 2024-02-17 | 2023-09-28 | 4.98 | 6.27 | 5.10 | 5.0 | 0.004 | 0.65 | 0.0 | 0.04 | 11.43 | 0.00 | 2.089 | 3.07 | 0.00 | 2.8 | 97.1 | 0.2 | -0.18 | 0.86 | 0.74 | — | 5.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.75 | 0.00 | 1.953 | 12.44 | 0.00 | 4.9 | 94.9 | 0.2 | 0.67 | 1.04 | 0.87 | 0.76 | — | 19524 | 1317 | 7 | 0 | 0 | 0 | 9627 | logfile |
✔ | 8UDG | 42149 | 2023-12-11 | 2023-09-28 | 4.98 | 6.27 | 5.10 | 5.0 | 0.004 | 0.65 | 0.0 | 0.04 | 11.43 | 0.00 | 2.089 | 3.07 | 0.00 | 2.8 | 97.1 | 0.2 | -0.18 | 0.86 | 0.74 | — | 5.0 | 0.002 | 0.52 | 0.0 | 0.04 | 11.70 | 0.00 | 1.998 | 11.26 | 0.00 | 4.4 | 95.4 | 0.2 | 0.66 | 1.06 | 0.87 | 0.75 | — | 19524 | 1317 | 7 | 0 | 0 | 0 | 9627 | logfile |
✔ | 6HV9 | 0288 | 2023-07-19 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.30 | 0.00 | 2.086 | 16.13 | 0.02 | 8.1 | 91.8 | 0.1 | -1.67 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-06-19 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 2.143 | 22.35 | 0.00 | 4.0 | 96.0 | 0.0 | -0.14 | 1.11 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2024-03-17 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 14.12 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.47 | 0.00 | 2.131 | 18.62 | 0.00 | 3.5 | 96.5 | 0.0 | 0.15 | 1.08 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-11-17 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 2.143 | 22.35 | 0.00 | 4.0 | 96.0 | 0.0 | -0.14 | 1.11 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2024-02-17 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 14.12 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.47 | 0.00 | 2.131 | 18.62 | 0.00 | 3.5 | 96.5 | 0.0 | 0.15 | 1.08 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-08-15 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 2.143 | 22.35 | 0.00 | 4.0 | 96.0 | 0.0 | -0.14 | 1.11 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-10-08 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 2.143 | 22.35 | 0.00 | 4.0 | 96.0 | 0.0 | -0.14 | 1.11 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-07-08 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 2.143 | 22.35 | 0.00 | 4.0 | 96.0 | 0.0 | -0.14 | 1.11 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-12-11 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 14.00 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.004 | 0.68 | 0.0 | 0.04 | 14.49 | 0.00 | 2.119 | 25.23 | 0.00 | 5.0 | 95.0 | 0.0 | -0.53 | 1.15 | 0.91 | 0.82 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7YMY | 33947 | 2024-03-20 | 2022-07-29 | 4.96 | 9.09 | 5.33 | 5.2 | 0.006 | 0.96 | 3.0 | 0.06 | 16.64 | 0.01 | 2.203 | 11.52 | 0.50 | 8.6 | 91.2 | 0.2 | -2.07 | 0.89 | 0.80 | — | 5.2 | 0.003 | 0.66 | 0.0 | 0.05 | 14.39 | 0.00 | 2.094 | 21.82 | 0.00 | 7.2 | 92.8 | 0.0 | -1.47 | 1.25 | 0.91 | 0.85 | — | 27677 | 3498 | 15 | 0 | 46 | 0 | 0 | logfile |
✔ | 7YMY | 33947 | 2024-02-20 | 2022-07-29 | 4.96 | 9.09 | 5.33 | 5.2 | 0.006 | 0.96 | 3.0 | 0.06 | 16.64 | 0.01 | 2.203 | 11.52 | 0.50 | 8.6 | 91.2 | 0.2 | -2.07 | 0.89 | 0.80 | — | 5.2 | 0.003 | 0.66 | 0.0 | 0.05 | 14.39 | 0.00 | 2.094 | 21.82 | 0.00 | 7.2 | 92.8 | 0.0 | -1.47 | 1.25 | 0.91 | 0.85 | — | 27677 | 3498 | 15 | 0 | 46 | 0 | 0 | logfile |
✔ | 7YMY | 33947 | 2023-10-13 | 2022-07-29 | 4.96 | 9.09 | 5.33 | 5.2 | 0.006 | 0.96 | 3.0 | 0.06 | 14.84 | 0.01 | 2.203 | 11.52 | 0.50 | 8.6 | 91.2 | 0.2 | -2.07 | 0.89 | 0.80 | — | 5.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.31 | 0.00 | 2.089 | 23.94 | 0.00 | 7.7 | 92.3 | 0.0 | -1.43 | 1.24 | 0.91 | 0.85 | — | 27677 | 3498 | 15 | 0 | 46 | 0 | 0 | logfile |