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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
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✘ | 7VFU | 31959 | 2023-12-12 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19946 | 2409 | 9 | 0 | 41 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2023-12-08 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 32.65 | 0.00 | 1.844 | 8.23 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 7VFV | 31960 | 2023-12-12 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19776 | 2383 | 8 | 0 | 40 | 0 | 0 | logfile |
✘ | 7NYR | 12653 | 2023-12-16 | 2021-03-23 | 3.3 | 3.49 | 3.68 | 3.5 | 0.005 | 0.87 | 0.0 | 0.05 | 14.05 | 0.01 | 2.160 | 3.84 | 0.82 | 3.4 | 96.6 | 0.0 | -1.75 | 0.62 | 0.69 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35228 | 4618 | 18 | 0 | 11 | 0 | 0 | logfile |
✘ | 6UiW | 20789 | 2023-12-13 | 2019-10-01 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23617 | 3234 | 22 | 0 | 11 | 0 | 0 | logfile |
✘ | 8DJK | 27460 | 2023-12-08 | 2022-06-30 | 3.33 | 3.77 | 3.32 | 3.7 | 0.029 | 1.52 | 1.0 | 1.03 | 32.03 | 0.01 | 1.327 | 7.25 | 0.82 | 5.0 | 95.0 | 0.0 | -1.84 | 0.48 | 0.73 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7091 | 870 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 7FBS | 31519 | 2023-12-08 | 2021-07-12 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9274 | 1118 | 1 | 0 | 17 | 0 | 0 | logfile |
✘ | 7XVF | 33485 | 2023-12-10 | 2022-05-22 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13625 | 1554 | 8 | 0 | 42 | 0 | 0 | logfile |
✘ | 7XVE | 33484 | 2023-12-10 | 2022-05-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13659 | 1569 | 8 | 0 | 42 | 0 | 0 | logfile |
✘ | 7UB5 | 26435 | 2023-12-13 | 2022-03-14 | 3.35 | 3.64 | 3.34 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 13.35 | 0.01 | 2.287 | 3.61 | 0.00 | 3.5 | 96.5 | 0.0 | -0.85 | 0.85 | 0.87 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24923 | 3104 | 16 | 0 | 47 | 0 | 0 | logfile |
✘ | 7ZES | 14692 | 2023-12-10 | 2022-03-31 | 3.1 | 3.32 | 3.11 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 13.69 | 0.01 | 1.966 | 5.90 | 0.00 | 2.3 | 97.7 | 0.0 | 0.35 | 0.75 | 0.82 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13538 | 1654 | 6 | 10 | 4 | 0 | 0 | logfile |
✘ | 6U9V | 20702 | 2023-12-14 | 2019-09-09 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26701 | 1680 | 15 | 3 | 54 | 0 | 12634 | logfile |
✘ | 6JP5 | 9866 | 2023-12-12 | 2019-03-25 | 2.9 | 3.03 | — | 3.1 | 0.016 | 1.54 | 4.0 | 0.13 | 15.71 | 0.01 | 1.921 | 28.83 | 6.11 | 7.7 | 91.7 | 0.6 | -3.65 | 0.56 | 0.62 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22068 | 2694 | 14 | 0 | 39 | 0 | 0 | logfile |
✘ | 6U9W | 20703 | 2023-12-14 | 2019-09-09 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26919 | 1686 | 12 | 3 | 42 | 0 | 12885 | logfile |
✘ | 6CRV | 7573 | 2023-12-12 | 2018-03-19 | 3.2 | 3.31 | 3.17 | 3.3 | 0.013 | 1.09 | 0.0 | 0.06 | 9.58 | 0.01 | 2.170 | 4.36 | 0.26 | 4.1 | 95.9 | 0.0 | -3.09 | 0.74 | 0.81 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21036 | 2643 | 15 | 0 | 39 | 0 | 0 | logfile |
✘ | 6U5Z | 20659 | 2023-12-13 | 2019-08-28 | 3.5 | 3.66 | — | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 9.08 | 0.00 | 2.194 | 6.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.58 | 0.49 | 0.58 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24606 | 3174 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YFL | 33792 | 2023-12-12 | 2022-07-08 | 3.9 | 4.15 | 3.84 | 4.0 | 0.005 | 0.64 | 0.0 | 0.04 | 16.70 | 0.00 | 2.260 | 9.01 | 0.34 | 7.9 | 91.8 | 0.3 | -0.49 | 0.72 | 0.77 | 1.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19968 | 2778 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 5GAE | 8001 | 2023-12-15 | 2015-11-25 | 3.33 | 3.45 | — | 3.3 | 0.007 | 0.94 | 0.0 | 0.04 | 22.21 | 0.00 | 1.884 | 5.65 | 5.36 | 3.0 | 96.9 | 0.1 | -2.76 | 0.79 | 0.88 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 95192 | 3886 | 41 | 3007 | 349 | 0 | 0 | logfile |
✘ | 8EoS | 28466 | 2023-12-13 | 2022-10-04 | 3.1 | 3.84 | 3.11 | 3.5 | 0.005 | 0.57 | 0.0 | 0.04 | 15.23 | 0.00 | 1.840 | 20.11 | 3.59 | 5.2 | 94.7 | 0.2 | -0.81 | 0.90 | 0.89 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25606 | 3069 | 11 | 87 | 5 | 0 | 0 | logfile |
✘ | 7KML | 22926 | 2023-12-16 | 2020-11-03 | 3.8 | 4.97 | 3.83 | 3.8 | 0.018 | 1.87 | 0.0 | 0.10 | 10.87 | 0.01 | 2.415 | 0.65 | 0.39 | 1.9 | 98.1 | 0.0 | 0.45 | 0.89 | 0.76 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35136 | 4413 | 39 | 0 | 78 | 0 | 0 | logfile |