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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UGo | 26492 | 2024-03-19 | 2022-03-25 | 4.1 | 4.21 | 4.03 | 4.2 | 0.004 | 0.64 | 0.0 | 0.25 | 16.02 | 0.00 | 0.965 | 8.10 | 0.15 | 5.9 | 94.1 | 0.0 | -3.57 | 0.77 | 0.82 | — | 4.2 | 0.006 | 0.79 | 0.0 | 0.05 | 13.33 | 0.00 | 2.065 | 11.75 | 0.04 | 9.8 | 90.2 | 0.0 | -2.13 | 1.26 | 0.77 | 0.83 | — | 25590 | 3138 | 44 | 0 | 87 | 0 | 0 | logfile |
✔ | 6iG9 | 9664 | 2024-03-17 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 5.17 | 0.00 | 2.218 | 2.46 | 0.00 | 9.7 | 90.3 | 0.0 | 0.91 | 1.56 | 0.87 | 0.72 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R18 | 14234 | 2024-03-20 | 2022-02-02 | 3.0 | 3.30 | 3.33 | 3.2 | 0.006 | 0.71 | 0.0 | 0.06 | 10.84 | 0.01 | 2.212 | 2.74 | 0.32 | 3.9 | 96.1 | 0.0 | 0.28 | 0.78 | 0.79 | 3.10 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 12.75 | 0.00 | 2.153 | 4.25 | 1.72 | 3.7 | 96.3 | 0.0 | 0.24 | 1.17 | 0.81 | 0.83 | 2.63 | 25773 | 3189 | 15 | 0 | 60 | 0 | 0 | logfile |
✔ | 6RBG | 4798 | 2024-03-17 | 2019-04-10 | 3.0 | 3.55 | — | 3.4 | 0.004 | 0.89 | 0.0 | 0.05 | 14.50 | 0.00 | 2.407 | 3.44 | 0.38 | 2.0 | 98.0 | 0.0 | -6.39 | 0.67 | 0.80 | 3.37 | 3.4 | 0.002 | 0.64 | 0.0 | 0.04 | 17.20 | 0.00 | 2.322 | 4.56 | 2.04 | 1.3 | 98.7 | 0.0 | 0.47 | 0.54 | 0.72 | 0.85 | 2.35 | 19336 | 2464 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LZ1 | 30021 | 2024-03-22 | 2020-02-17 | 3.2 | 3.36 | 3.57 | 3.3 | 0.005 | 0.61 | 0.0 | 0.05 | 15.47 | 0.00 | 2.099 | 11.03 | 2.52 | 7.7 | 92.3 | 0.0 | -3.40 | 0.87 | 0.86 | 3.56 | 3.3 | 0.004 | 0.58 | 0.0 | 0.04 | 16.42 | 0.00 | 2.050 | 10.47 | 3.68 | 6.7 | 93.3 | 0.0 | -1.44 | 0.33 | 0.86 | 0.87 | 3.49 | 34492 | 4304 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZY3 | 11548 | 2024-03-16 | 2020-07-30 | 3.3 | 3.38 | — | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.13 | 0.00 | 2.332 | 3.15 | 0.18 | 4.8 | 95.2 | 0.0 | -5.92 | 0.66 | 0.74 | 1.69 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 15.35 | 0.00 | 2.094 | 6.49 | 2.48 | 6.1 | 93.9 | 0.0 | -1.16 | 1.23 | 0.70 | 0.84 | 1.77 | 15770 | 2071 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 5VYA | 8746 | 2024-03-20 | 2017-05-24 | 4.0 | 4.09 | — | 4.0 | 0.024 | 1.94 | 1.0 | 0.10 | 12.78 | 0.01 | 1.095 | 10.89 | 0.77 | 4.6 | 94.1 | 1.4 | -1.01 | 0.73 | 0.65 | — | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 17.66 | 0.00 | 2.110 | 20.40 | 2.92 | 6.6 | 92.9 | 0.5 | -0.64 | 1.55 | 0.80 | 0.78 | — | 27691 | 3474 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 7XGY | 33189 | 2024-03-10 | 2022-04-07 | 3.5 | 3.46 | 3.56 | 3.3 | 0.008 | 1.16 | 0.0 | 0.06 | 16.48 | 0.01 | 2.307 | 9.06 | 2.17 | 6.4 | 93.6 | 0.0 | -3.05 | 0.78 | 0.73 | 2.38 | 3.3 | 0.004 | 0.81 | 0.0 | 0.05 | 18.06 | 0.01 | 2.027 | 19.11 | 5.21 | 5.5 | 94.5 | 0.0 | 0.99 | 1.11 | 0.78 | 0.73 | 1.22 | 4555 | 574 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6TFK | 10493 | 2024-03-24 | 2019-11-14 | 2.9 | 3.06 | 2.94 | 3.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 1.917 | 7.45 | 0.24 | 9.1 | 90.9 | 0.0 | -2.49 | 0.72 | 0.77 | 2.62 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 13.84 | 0.00 | 1.920 | 7.66 | 1.87 | 6.7 | 93.2 | 0.1 | -0.77 | 0.72 | 0.72 | 0.79 | 2.42 | 43237 | 2724 | 5 | 0 | 1 | 0 | 21544 | logfile |
✔ | 5K7L | 8215 | 2024-03-19 | 2016-05-26 | 3.78 | 6.37 | — | 3.6 | 0.008 | 1.36 | 20.0 | 0.07 | 13.10 | 0.00 | 2.315 | 9.11 | 0.35 | 7.3 | 92.6 | 0.1 | -0.20 | 0.75 | 0.79 | 1.04 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 13.67 | 0.00 | 2.152 | 10.26 | 0.79 | 4.3 | 95.7 | 0.0 | 1.47 | 2.35 | 0.75 | 0.81 | 0.66 | 24696 | 3372 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2024-03-19 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 9.48 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.30 | 0.00 | 2.129 | 13.13 | 1.75 | 5.0 | 95.0 | 0.0 | -0.54 | 0.86 | 0.88 | 0.81 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 6LMX | 0923 | 2024-03-16 | 2019-12-26 | 3.4 | 3.53 | 3.23 | 3.5 | 0.019 | 1.32 | 0.0 | 0.07 | 15.24 | 0.01 | 2.161 | 4.67 | 1.26 | 2.1 | 97.9 | 0.0 | -6.20 | 0.60 | 0.78 | 2.56 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.08 | 0.01 | 2.182 | 6.93 | 3.00 | 2.8 | 97.2 | 0.0 | 2.39 | 1.51 | 0.66 | 0.82 | 1.19 | 15588 | 2160 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YKM | 10828 | 2024-03-15 | 2020-04-06 | 3.1 | 3.19 | 2.97 | 3.2 | 0.009 | 1.07 | 0.0 | 0.06 | 11.10 | 0.01 | 2.256 | 4.12 | 0.00 | 3.0 | 97.0 | 0.0 | -4.68 | 0.68 | 0.86 | 4.14 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 14.78 | 0.00 | 2.156 | 9.09 | 1.81 | 2.5 | 97.5 | 0.0 | 1.00 | 1.06 | 0.68 | 0.88 | 2.45 | 10434 | 1357 | 10 | 0 | 0 | 8 | 0 | logfile |
✔ | 6RLB | 4918 | 2024-03-18 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.71 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 5.23 | 0.00 | 2.224 | 3.54 | 0.00 | 11.8 | 88.1 | 0.0 | -0.71 | 1.83 | 0.86 | 0.66 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RMG | 4936 | 2024-03-18 | 2019-05-06 | 3.4 | 3.70 | — | 3.6 | 0.011 | 1.45 | 0.0 | 0.08 | 13.22 | 0.01 | 2.042 | 4.20 | 0.10 | 8.7 | 91.3 | 0.0 | -3.98 | 0.72 | 0.80 | 3.37 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 13.51 | 0.00 | 1.878 | 11.13 | 1.60 | 7.5 | 92.5 | 0.0 | 0.40 | 0.82 | 0.77 | 0.86 | 2.79 | 19137 | 1176 | 5 | 0 | 19 | 0 | 9327 | logfile |
✔ | 7TMP | 25998 | 2024-03-22 | 2022-01-19 | 3.3 | 3.47 | — | 3.4 | 0.004 | 0.54 | 0.0 | 0.04 | 12.38 | 0.00 | 1.989 | 8.91 | 0.38 | 3.5 | 96.5 | 0.1 | 1.23 | 0.78 | 0.84 | 3.41 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 14.17 | 0.00 | 1.916 | 8.96 | 2.35 | 3.2 | 96.8 | 0.0 | 1.11 | 0.27 | 0.80 | 0.86 | 2.96 | 32105 | 4805 | 16 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JZL | 22532 | 2024-03-19 | 2020-09-02 | 2.7 | 2.90 | 2.83 | 2.9 | 0.014 | 1.44 | 0.0 | 0.10 | 9.95 | 0.01 | 2.317 | 0.89 | 0.61 | 2.3 | 97.5 | 0.2 | 0.44 | 0.75 | 0.78 | 3.62 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 13.75 | 0.00 | 2.228 | 5.32 | 2.62 | 2.0 | 97.9 | 0.1 | 0.66 | 1.23 | 0.76 | 0.82 | 3.51 | 23123 | 3105 | 22 | 0 | 59 | 0 | 0 | logfile |
✔ | 7LUA | 23519 | 2024-03-24 | 2021-02-21 | 4.7 | 5.59 | 4.78 | 4.1 | 0.015 | 1.97 | 9.0 | 0.12 | 20.57 | 0.02 | 2.541 | 0.91 | 2.85 | 9.1 | 89.8 | 1.1 | -2.53 | 0.78 | 0.67 | — | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 12.37 | 0.00 | 1.913 | 17.31 | 0.17 | 11.2 | 88.7 | 0.1 | -2.48 | 0.66 | 0.87 | 0.81 | — | 42495 | 2650 | 56 | 0 | 139 | 0 | 20105 | logfile |
✔ | 8HiZ | 34830 | 2024-03-10 | 2022-11-22 | 3.08 | 3.26 | 2.97 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 16.64 | 0.00 | 2.324 | 14.33 | 0.30 | 2.9 | 97.1 | 0.0 | 1.51 | 0.40 | 0.77 | 2.44 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.53 | 0.00 | 2.132 | 13.40 | 1.52 | 4.1 | 95.9 | 0.0 | 0.88 | 1.06 | 0.40 | 0.80 | 2.29 | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7X29 | 32962 | 2024-03-23 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.014 | 1.76 | 19.0 | 0.11 | 13.58 | 0.00 | 1.135 | 7.42 | 8.77 | 2.7 | 96.7 | 0.6 | 1.84 | 0.82 | 0.73 | 2.26 | 1.9 | 0.004 | 0.72 | 2.0 | 0.04 | 15.05 | 0.00 | 2.145 | 9.03 | 3.47 | 4.4 | 95.4 | 0.2 | -0.17 | 1.73 | 0.88 | 0.86 | 2.94 | 32453 | 4230 | 7 | 0 | 0 | 0 | 0 | logfile |