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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WD6 | 21625 | 2024-03-01 | 2020-03-31 | 3.7 | 4.07 | 4.15 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.03 | 0.01 | 1.316 | 11.51 | 0.71 | 11.1 | 87.3 | 1.6 | -4.98 | 0.83 | 0.82 | 0.92 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 23.46 | 0.01 | 2.049 | 24.55 | 6.10 | 10.4 | 89.4 | 0.2 | -2.60 | 1.49 | 0.84 | 0.83 | 0.78 | 153103 | 6396 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 8H0Y | 34418 | 2024-03-19 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.85 | 0.0 | 0.06 | 13.44 | 0.01 | 2.274 | 2.60 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | 3.0 | 0.007 | 0.67 | 0.0 | 0.05 | 14.63 | 0.00 | 2.169 | 4.49 | 1.90 | 4.0 | 96.0 | 0.0 | -0.47 | 1.14 | 0.82 | 0.88 | 3.46 | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✔ | 7UUY | 26806 | 2024-03-10 | 2022-04-29 | 3.3 | 3.47 | 3.28 | 3.5 | 0.004 | 0.58 | 0.0 | 0.04 | 13.50 | 0.00 | 2.067 | 5.68 | 0.25 | 5.5 | 94.5 | 0.0 | 0.72 | 0.61 | 0.84 | 2.03 | 3.5 | 0.004 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.175 | 7.23 | 2.27 | 4.6 | 95.4 | 0.0 | 1.30 | 1.54 | 0.59 | 0.83 | 1.61 | 3809 | 503 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6WD1 | 21620 | 2024-03-23 | 2020-03-31 | 3.3 | 3.61 | 3.63 | 3.4 | 0.006 | 0.94 | 0.0 | 0.08 | 22.10 | 0.01 | 2.219 | 11.79 | 0.55 | 10.6 | 87.9 | 1.5 | -5.05 | 0.82 | 0.83 | 1.64 | 3.4 | 0.005 | 0.66 | 1.0 | 0.04 | 23.08 | 0.00 | 1.857 | 18.24 | 4.89 | 9.2 | 90.6 | 0.1 | -2.14 | 0.64 | 0.83 | 0.85 | 1.18 | 146942 | 6023 | 56 | 4657 | 0 | 0 | 0 | logfile |
✔ | 6XRT | 22295 | 2024-03-17 | 2020-07-13 | 3.9 | 4.73 | 4.04 | 4.2 | 0.006 | 0.95 | 4.0 | 0.07 | 17.06 | 0.01 | 2.279 | 5.00 | 0.93 | 4.9 | 95.1 | 0.0 | -2.77 | 0.82 | 0.75 | 0.64 | 4.2 | 0.004 | 0.70 | 0.0 | 0.05 | 14.33 | 0.00 | 2.122 | 13.73 | 2.10 | 6.3 | 93.7 | 0.0 | -1.44 | 1.69 | 0.84 | 0.85 | 1.47 | 16647 | 1947 | 32 | 0 | 100 | 0 | 0 | logfile |
✔ | 7YJo | 33876 | 2024-03-11 | 2022-07-20 | 2.8 | 2.95 | 2.77 | 2.9 | 0.011 | 1.04 | 1.0 | 0.06 | 14.21 | 0.01 | 2.161 | 5.59 | 0.74 | 6.0 | 93.9 | 0.1 | -1.89 | 0.75 | 0.89 | 3.58 | 2.9 | 0.002 | 0.53 | 0.0 | 0.04 | 15.76 | 0.00 | 2.255 | 4.28 | 0.95 | 3.7 | 96.3 | 0.0 | 0.40 | 1.13 | 0.71 | 0.88 | 3.05 | 8769 | 1106 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CZX | 30520 | 2024-03-22 | 2020-09-09 | 2.8 | 2.91 | — | 2.9 | 0.011 | 1.10 | 1.0 | 0.07 | 17.55 | 0.01 | 1.913 | 29.18 | 11.08 | 11.0 | 85.5 | 3.5 | -3.96 | 0.66 | 0.73 | 1.71 | 2.9 | 0.003 | 0.76 | 0.0 | 0.05 | 16.52 | 0.00 | 2.174 | 8.96 | 3.42 | 7.4 | 92.4 | 0.2 | -1.24 | 0.83 | 0.71 | 0.83 | 2.05 | 34879 | 4368 | 32 | 0 | 71 | 0 | 0 | logfile |
✔ | 6WDK | 21639 | 2024-03-26 | 2020-03-31 | 3.6 | 3.94 | 3.93 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 21.91 | 0.01 | 1.311 | 8.08 | 0.51 | 11.0 | 87.2 | 1.8 | -4.81 | 0.82 | 0.82 | 1.17 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 23.36 | 0.01 | 2.024 | 20.66 | 6.19 | 10.1 | 89.7 | 0.2 | -2.42 | 1.52 | 0.83 | 0.83 | 1.02 | 150222 | 6025 | 60 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6X98 | 22104 | 2024-03-17 | 2020-06-02 | 3.38 | 3.98 | 3.45 | 3.9 | 0.020 | 1.71 | 0.0 | 0.09 | 11.48 | 0.01 | 2.363 | 1.13 | 0.15 | 2.1 | 97.9 | 0.0 | 1.15 | 0.79 | 0.82 | 3.17 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 13.40 | 0.00 | 2.203 | 7.50 | 2.61 | 3.8 | 96.2 | 0.0 | 0.42 | 2.42 | 0.72 | 0.78 | 2.67 | 19269 | 2367 | 27 | 0 | 66 | 0 | 0 | logfile |
✔ | 6X2Z | 22014 | 2024-03-10 | 2020-05-21 | 3.03 | 3.18 | — | 3.2 | 0.005 | 0.84 | 0.0 | 0.05 | 15.51 | 0.01 | 2.131 | 6.52 | 0.00 | 3.6 | 96.4 | 0.0 | -5.65 | 0.44 | 0.86 | 2.63 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 16.01 | 0.00 | 2.170 | 8.94 | 2.27 | 3.1 | 96.9 | 0.0 | 0.83 | 0.95 | 0.43 | 0.86 | 2.22 | 3205 | 420 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7DWZ | 30890 | 2024-03-19 | 2021-01-18 | 3.3 | 3.37 | — | 3.3 | 0.012 | 1.03 | 0.0 | 0.09 | 17.98 | 0.01 | 1.909 | 25.24 | 12.63 | 10.2 | 86.4 | 3.5 | -4.12 | 0.70 | 0.75 | 1.84 | 3.3 | 0.004 | 0.72 | 0.0 | 0.05 | 16.10 | 0.00 | 2.123 | 7.86 | 3.82 | 6.7 | 93.0 | 0.3 | -1.01 | 0.81 | 0.74 | 0.85 | 1.85 | 24598 | 3019 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7DX2 | 30893 | 2024-03-19 | 2021-01-18 | 3.3 | 3.42 | — | 3.3 | 0.012 | 1.03 | 0.0 | 0.08 | 18.04 | 0.01 | 1.905 | 22.56 | 12.95 | 10.5 | 86.3 | 3.1 | -4.17 | 0.78 | 0.81 | 2.88 | 3.3 | 0.004 | 0.71 | 0.0 | 0.05 | 15.93 | 0.00 | 2.185 | 6.72 | 3.38 | 7.1 | 92.7 | 0.2 | -0.89 | 1.35 | 0.80 | 0.88 | 2.74 | 23740 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7Q97 | 13867 | 2024-03-22 | 2021-11-12 | 3.3 | 3.10 | 3.26 | 3.3 | 0.009 | 0.65 | 0.0 | 0.05 | 10.05 | 0.00 | 1.936 | 4.37 | 0.56 | 3.5 | 96.4 | 0.1 | -0.08 | 0.68 | 0.76 | 4.77 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 14.13 | 0.00 | 1.951 | 5.03 | 1.46 | 4.5 | 95.4 | 0.1 | -0.41 | 1.14 | 0.69 | 0.79 | 4.37 | 32806 | 2094 | 2 | 0 | 0 | 0 | 15752 | logfile |
✔ | 7ZJH | 14748 | 2024-03-17 | 2022-04-11 | 3.39 | 3.74 | 3.43 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 11.15 | 0.00 | 2.223 | 5.18 | 2.73 | 7.5 | 92.4 | 0.1 | -0.54 | 0.68 | 0.81 | 1.89 | 3.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.64 | 0.00 | 2.190 | 8.17 | 2.63 | 8.6 | 91.2 | 0.2 | -0.13 | 0.98 | 0.70 | 0.84 | 1.72 | 18984 | 2344 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CZR | 30514 | 2024-03-21 | 2020-09-09 | 3.5 | 3.59 | — | 3.5 | 0.011 | 1.04 | 0.0 | 0.07 | 17.54 | 0.01 | 1.981 | 21.59 | 11.95 | 10.4 | 87.8 | 1.8 | -3.83 | 0.63 | 0.72 | 1.81 | 3.5 | 0.003 | 0.73 | 0.0 | 0.05 | 16.43 | 0.00 | 2.028 | 9.20 | 3.58 | 7.3 | 92.5 | 0.2 | -1.07 | 1.76 | 0.65 | 0.78 | 1.77 | 30886 | 3854 | 30 | 0 | 70 | 0 | 0 | logfile |
✔ | 7DX3 | 30894 | 2024-03-19 | 2021-01-18 | 3.5 | 3.62 | — | 3.5 | 0.012 | 1.02 | 0.0 | 0.07 | 17.94 | 0.01 | 1.828 | 24.54 | 12.74 | 10.6 | 86.3 | 3.1 | -4.13 | 0.69 | 0.77 | 2.14 | 3.5 | 0.003 | 0.73 | 0.0 | 0.05 | 16.09 | 0.00 | 2.109 | 7.85 | 3.29 | 6.6 | 93.3 | 0.1 | -0.96 | 2.05 | 0.72 | 0.83 | 2.26 | 23752 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7DX8 | 30899 | 2024-03-22 | 2021-01-18 | 2.9 | 3.03 | — | 3.0 | 0.011 | 0.99 | 0.0 | 0.08 | 17.18 | 0.01 | 1.932 | 16.50 | 9.61 | 8.3 | 89.7 | 2.0 | -4.47 | 0.68 | 0.75 | 1.97 | 3.0 | 0.005 | 0.77 | 0.0 | 0.05 | 16.62 | 0.00 | 2.122 | 8.64 | 3.82 | 6.3 | 93.5 | 0.2 | -0.99 | 0.83 | 0.70 | 0.77 | 2.23 | 34338 | 4174 | 42 | 0 | 93 | 0 | 0 | logfile |
✔ | 7YNi | 33962 | 2024-03-10 | 2022-07-31 | 3.26 | 3.56 | 3.00 | 3.6 | 0.004 | 0.66 | 0.0 | 0.04 | 10.92 | 0.01 | 2.206 | 19.26 | 0.00 | 5.0 | 94.5 | 0.5 | 0.78 | 0.44 | 0.69 | 1.96 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 13.68 | 0.01 | 2.270 | 12.15 | 2.09 | 4.0 | 95.7 | 0.3 | 1.60 | 0.93 | 0.49 | 0.72 | 1.79 | 4387 | 594 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EH5 | 28135 | 2024-03-10 | 2022-09-13 | 3.36 | 3.60 | 3.32 | 3.6 | 0.023 | 1.81 | 1.0 | 0.09 | 10.68 | 0.01 | 2.236 | 2.69 | 0.50 | 3.9 | 95.5 | 0.6 | 0.43 | 0.69 | 0.76 | 3.22 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 15.50 | 0.00 | 2.197 | 13.73 | 3.68 | 6.7 | 93.2 | 0.1 | 0.25 | 0.92 | 0.67 | 0.76 | 2.54 | 5503 | 704 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RVS | 10011 | 2024-03-23 | 2019-05-31 | 3.59 | 3.68 | — | 3.6 | 0.007 | 1.04 | 12.0 | 0.06 | 14.97 | 0.01 | 2.307 | 7.47 | 0.56 | 8.4 | 91.1 | 0.5 | -4.57 | 0.77 | 0.82 | 2.18 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 16.57 | 0.00 | 2.308 | 8.03 | 3.64 | 7.6 | 92.4 | 0.0 | -0.62 | 1.21 | 0.77 | 0.82 | 1.60 | 38388 | 4764 | 12 | 0 | 0 | 0 | 0 | logfile |