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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PMH | 13533 | 2024-03-15 | 2021-09-02 | 3.4 | 4.28 | 3.26 | 3.3 | 0.009 | 1.01 | 2.0 | 0.06 | 15.50 | 0.01 | 1.310 | 4.17 | 0.09 | 0.2 | 99.8 | 0.0 | -1.51 | 0.91 | 0.83 | 3.35 | 3.3 | 0.002 | 0.61 | 0.0 | 0.04 | 15.67 | 0.00 | 2.012 | 6.89 | 0.37 | 1.5 | 98.5 | 0.0 | 1.79 | 0.64 | 0.94 | 0.88 | 2.74 | 10154 | 1259 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6G1S | 4340 | 2024-03-14 | 2018-03-21 | 3.93 | 4.13 | 3.54 | 4.0 | 0.008 | 0.89 | 0.0 | 0.05 | 13.70 | 0.00 | 2.015 | 12.38 | 0.00 | 12.7 | 87.3 | 0.0 | -4.00 | 0.62 | 0.78 | 1.56 | 4.0 | 0.002 | 0.64 | 0.0 | 0.04 | 16.77 | 0.00 | 1.995 | 25.28 | 1.58 | 9.8 | 90.2 | 0.0 | 0.24 | 1.85 | 0.62 | 0.78 | 1.99 | 9891 | 645 | 4 | 30 | 1 | 0 | 4096 | logfile |
✔ | 8FKW | 29259 | 2024-03-19 | 2022-12-21 | 2.5 | 2.85 | 2.62 | 2.8 | 0.003 | 0.53 | 0.0 | 0.03 | 19.82 | 0.00 | 1.946 | 1.75 | 0.01 | 1.1 | 98.9 | 0.0 | 2.03 | 0.80 | 0.82 | 3.78 | 2.8 | 0.002 | 0.51 | 0.0 | 0.03 | 20.32 | 0.00 | 1.949 | 5.42 | 1.16 | 1.6 | 98.4 | 0.0 | 1.86 | 1.15 | 0.81 | 0.86 | 3.25 | 139783 | 10864 | 65 | 2499 | 63 | 0 | 0 | logfile |
✔ | 8D13 | 27114 | 2024-03-14 | 2022-05-26 | 2.43 | 3.23 | 2.44 | 2.8 | 0.003 | 0.60 | 0.0 | 0.05 | 13.77 | 0.00 | 2.067 | 4.19 | 0.64 | 0.8 | 99.2 | 0.0 | 1.47 | 0.69 | 0.86 | 4.45 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 14.61 | 0.00 | 1.915 | 3.73 | 0.32 | 1.5 | 98.5 | 0.0 | 1.54 | 1.09 | 0.70 | 0.92 | 4.32 | 9216 | 1113 | 9 | 0 | 6 | 432 | 0 | logfile |
✔ | 6oFG | 20045 | 2024-03-15 | 2019-03-29 | 2.9 | 3.01 | — | 3.0 | 0.008 | 0.75 | 0.0 | 0.04 | 10.04 | 0.01 | 2.263 | 5.31 | 0.00 | 3.9 | 96.1 | 0.0 | -6.09 | 0.65 | 0.85 | 4.64 | 3.0 | 0.002 | 0.52 | 0.0 | 0.03 | 14.16 | 0.00 | 2.133 | 7.52 | 4.02 | 3.4 | 96.6 | 0.0 | 5.02 | 0.52 | 0.66 | 0.87 | 3.09 | 10980 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BX7 | 30235 | 2024-03-10 | 2020-04-17 | 2.8 | 2.94 | — | 2.9 | 0.009 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.228 | 15.34 | 0.00 | 9.3 | 90.7 | 0.0 | -5.83 | 0.40 | 0.79 | 6.36 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 13.82 | 0.00 | 2.184 | 8.97 | 1.15 | 7.0 | 93.0 | 0.0 | -5.39 | 0.52 | 0.40 | 0.77 | 5.28 | 1896 | 270 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G7o | 29818 | 2024-03-22 | 2023-02-16 | 3.4 | 3.73 | 3.51 | 3.6 | 0.003 | 0.57 | 0.0 | 0.05 | 14.09 | 0.00 | 2.133 | 3.99 | 0.00 | 2.2 | 97.8 | 0.0 | 1.72 | 0.69 | 0.85 | 2.60 | 3.6 | 0.002 | 0.51 | 0.0 | 0.04 | 14.55 | 0.00 | 2.206 | 4.45 | 1.07 | 1.7 | 98.3 | 0.0 | 1.61 | 0.39 | 0.68 | 0.86 | 2.22 | 33047 | 4389 | 21 | 0 | 7 | 0 | 0 | logfile |
✔ | 8BXF | 16317 | 2024-03-15 | 2022-12-08 | 3.4 | 3.97 | 3.47 | 3.9 | 0.005 | 0.96 | 0.0 | 0.06 | 13.51 | 0.01 | 2.365 | 5.27 | 0.38 | 4.3 | 95.7 | 0.0 | -2.13 | 0.67 | 0.81 | 3.05 | 3.9 | 0.002 | 0.63 | 0.0 | 0.04 | 15.07 | 0.00 | 2.190 | 9.36 | 1.82 | 3.1 | 96.9 | 0.0 | 0.22 | 0.89 | 0.69 | 0.84 | 1.95 | 12692 | 1630 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 8F2A | 28810 | 2024-03-14 | 2022-11-07 | 2.2 | 2.40 | 2.32 | 2.5 | 0.004 | 0.60 | 0.0 | 0.05 | 13.83 | 0.00 | 2.188 | 4.68 | 0.76 | 1.7 | 98.3 | 0.0 | -2.70 | 0.65 | 0.84 | 4.09 | 2.5 | 0.002 | 0.57 | 0.0 | 0.04 | 15.89 | 0.00 | 2.187 | 6.30 | 1.42 | 1.6 | 98.4 | 0.0 | 0.76 | 0.49 | 0.64 | 0.84 | 3.86 | 10044 | 1276 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 8HG7 | 34737 | 2024-03-10 | 2022-11-14 | 3.1 | 2.83 | 3.04 | 3.0 | 0.017 | 2.20 | 2.0 | 0.09 | 14.42 | 0.01 | 2.121 | 6.92 | 2.19 | 4.6 | 95.4 | 0.0 | -2.67 | 0.56 | 0.81 | 4.34 | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 15.49 | 0.00 | 2.215 | 7.24 | 1.79 | 1.5 | 98.5 | 0.0 | 1.53 | 1.17 | 0.65 | 0.84 | 3.58 | 4808 | 619 | 3 | 0 | 3 | 2 | 0 | logfile |
✔ | 7PMD | 13529 | 2024-03-15 | 2021-09-02 | 2.9 | 4.01 | 2.83 | 3.4 | 0.012 | 1.06 | 1.0 | 0.06 | 15.52 | 0.01 | 1.314 | 3.61 | 0.09 | 0.2 | 99.8 | 0.0 | -1.33 | 0.94 | 0.88 | 3.40 | 3.5 | 0.002 | 0.67 | 0.0 | 0.04 | 15.43 | 0.00 | 2.048 | 6.08 | 0.37 | 1.5 | 98.5 | 0.0 | 1.73 | 1.27 | 0.93 | 0.87 | 2.96 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NCG | 12265 | 2024-03-15 | 2021-01-28 | 3.43 | 3.45 | 3.16 | 3.6 | 0.012 | 2.20 | 0.0 | 0.08 | 10.99 | 0.01 | 2.685 | 0.58 | 0.00 | 7.8 | 92.2 | 0.0 | -1.51 | 0.58 | 0.69 | 3.64 | 3.5 | 0.002 | 0.61 | 0.0 | 0.05 | 13.61 | 0.00 | 2.003 | 7.20 | 3.29 | 7.5 | 92.5 | 0.0 | -2.07 | 1.41 | 0.61 | 0.73 | 3.22 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 8W9T | 37381 | 2024-03-11 | 2023-09-05 | 2.6 | 2.34 | 2.82 | 2.7 | 0.005 | 0.60 | 0.0 | 0.04 | 12.30 | 0.00 | 2.090 | 8.43 | 0.00 | 1.7 | 98.1 | 0.2 | -1.88 | 0.54 | 0.80 | 3.36 | 2.7 | 0.002 | 0.52 | 0.0 | 0.04 | 14.71 | 0.00 | 2.119 | 6.42 | 1.87 | 1.7 | 98.3 | 0.0 | 2.58 | 0.41 | 0.54 | 0.80 | 3.50 | 6574 | 852 | 6 | 0 | 2 | 4 | 0 | logfile |
✔ | 7NCA | 12264 | 2024-03-15 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.51 | 0.0 | 0.05 | 13.24 | 0.00 | 2.471 | 0.86 | 1.74 | 3.7 | 96.3 | 0.0 | -2.97 | 0.75 | 0.69 | 0.84 | 3.63 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 8F38 | 28833 | 2024-03-22 | 2022-11-09 | 2.64 | 2.85 | 2.70 | 2.8 | 0.003 | 0.60 | 0.0 | 0.05 | 19.17 | 0.01 | 2.148 | 3.68 | 4.08 | 2.3 | 97.4 | 0.3 | 0.19 | 0.71 | 0.84 | 3.74 | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 16.61 | 0.00 | 2.238 | 4.29 | 3.02 | 2.0 | 97.9 | 0.1 | 0.61 | 0.73 | 0.75 | 0.89 | 3.84 | 16952 | 2121 | 21 | 0 | 33 | 50 | 0 | logfile |
✔ | 8oLQ | 16961 | 2024-03-10 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 8KG8 | 37213 | 2024-03-12 | 2023-08-17 | 4.23 | 6.03 | 4.25 | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.46 | 0.00 | 1.997 | 13.72 | 0.01 | 4.1 | 95.9 | 0.0 | 0.19 | 0.84 | 0.78 | — | 4.2 | 0.002 | 0.56 | 0.0 | 0.04 | 14.33 | 0.00 | 1.938 | 16.39 | 0.03 | 4.9 | 95.1 | 0.0 | 0.25 | 1.20 | 0.86 | 0.83 | — | 63829 | 7950 | 25 | 25 | 17 | 0 | 0 | logfile |
✔ | 8i95 | 35257 | 2024-03-11 | 2023-02-06 | 2.88 | 3.13 | 2.89 | 3.2 | 0.004 | 0.61 | 0.0 | 0.04 | 14.09 | 0.00 | 2.195 | 7.07 | 1.15 | 5.2 | 94.8 | 0.0 | 0.10 | 0.63 | 0.79 | 3.85 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 14.91 | 0.00 | 2.149 | 7.07 | 2.04 | 4.4 | 95.6 | 0.0 | 0.34 | 0.26 | 0.62 | 0.79 | 3.41 | 8153 | 1121 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7oZS | 13134 | 2024-03-15 | 2021-06-28 | 3.5 | 4.00 | — | 3.6 | 0.004 | 0.79 | 0.0 | 0.05 | 17.90 | 0.01 | 2.282 | 3.82 | 0.29 | 3.7 | 96.3 | 0.0 | -1.44 | 0.89 | 0.85 | 2.18 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 18.68 | 0.00 | 2.216 | 8.23 | 2.31 | 3.8 | 96.2 | 0.0 | 1.71 | 0.36 | 0.89 | 0.86 | 1.98 | 12770 | 1314 | 7 | 119 | 23 | 0 | 0 | logfile |
✔ | 8H1C | 34427 | 2024-03-17 | 2022-10-02 | 4.5 | 5.28 | 4.53 | 4.4 | 0.008 | 0.81 | 0.0 | 0.05 | 17.95 | 0.00 | 2.204 | 8.17 | 4.42 | 7.2 | 92.8 | 0.0 | -3.24 | 0.87 | 0.77 | — | 4.4 | 0.002 | 0.62 | 0.0 | 0.04 | 16.55 | 0.00 | 2.122 | 10.01 | 0.00 | 4.7 | 95.3 | 0.0 | -0.23 | 0.92 | 0.89 | 0.84 | — | 18483 | 1966 | 4 | 142 | 2 | 0 | 0 | logfile |