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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NT7 | 0504 | 2024-03-10 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.90 | 0.0 | 0.05 | 14.87 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 16.79 | 0.00 | 2.211 | 8.78 | 2.54 | 3.8 | 96.2 | 0.0 | 1.07 | 1.18 | 0.75 | 0.85 | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7KNT | 22962 | 2024-03-10 | 2020-11-06 | 3.15 | 4.00 | 3.32 | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 14.56 | 0.00 | 2.116 | 11.51 | 0.74 | 3.6 | 96.4 | 0.0 | -0.48 | 0.58 | 0.75 | 1.64 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 16.31 | 0.00 | 2.242 | 12.19 | 2.96 | 3.4 | 96.6 | 0.0 | 0.82 | 0.48 | 0.57 | 0.75 | 0.54 | 3716 | 455 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WAD | 32382 | 2024-03-18 | 2021-12-14 | 2.96 | 3.51 | 2.93 | 3.3 | 0.003 | 0.58 | 0.0 | 0.05 | 13.99 | 0.00 | 1.992 | 6.02 | 0.00 | 3.3 | 96.7 | 0.0 | -0.02 | 0.79 | 0.88 | 3.23 | 3.3 | 0.005 | 0.55 | 0.0 | 0.05 | 15.65 | 0.00 | 1.890 | 6.22 | 1.11 | 3.5 | 96.5 | 0.0 | 0.36 | 0.36 | 0.79 | 0.89 | 3.40 | 22268 | 2892 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6YBS | 10772 | 2024-03-20 | 2020-03-17 | 3.1 | 3.28 | 3.00 | 3.2 | 0.007 | 0.98 | 0.0 | 0.06 | 21.20 | 0.01 | 2.044 | 3.59 | 2.92 | 5.3 | 94.7 | 0.0 | -2.57 | 0.77 | 0.87 | 2.97 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 21.23 | 0.00 | 1.887 | 8.79 | 4.38 | 4.8 | 95.2 | 0.0 | -0.61 | 0.37 | 0.77 | 0.88 | 2.65 | 28732 | 2330 | 21 | 501 | 30 | 0 | 0 | logfile |
✔ | 7F2o | 31429 | 2024-03-14 | 2021-06-11 | 2.9 | 2.20 | — | 2.1 | 0.003 | 0.57 | 0.0 | 0.04 | 12.79 | 0.01 | 2.194 | 5.71 | 0.41 | 3.2 | 96.8 | 0.0 | -0.75 | 0.70 | 0.68 | 3.19 | 2.0 | 0.004 | 0.68 | 0.0 | 0.04 | 15.99 | 0.00 | 2.152 | 12.76 | 2.14 | 2.7 | 97.3 | 0.0 | 0.85 | 0.65 | 0.75 | 0.77 | 2.64 | 9004 | 1150 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VX4 | 21429 | 2024-03-14 | 2020-02-21 | 3.12 | 3.57 | 3.17 | 3.4 | 0.002 | 0.43 | 0.0 | 0.04 | 12.96 | 0.00 | 2.173 | 11.38 | 0.38 | 8.1 | 91.9 | 0.0 | -4.73 | 0.80 | 0.73 | 1.78 | 3.3 | 0.004 | 0.80 | 0.0 | 0.05 | 16.14 | 0.00 | 2.127 | 26.34 | 3.00 | 6.3 | 93.7 | 0.0 | -1.53 | 1.49 | 0.84 | 0.83 | 2.29 | 9813 | 1265 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZKG | 11248 | 2024-03-14 | 2020-06-30 | 3.4 | 3.44 | — | 3.4 | 0.007 | 1.01 | 0.0 | 1.02 | 12.37 | 0.01 | 2.213 | 5.65 | 0.06 | 4.5 | 95.4 | 0.0 | -3.31 | 0.65 | 0.81 | 3.31 | 3.4 | 0.008 | 1.59 | 0.0 | 0.31 | 15.91 | 0.00 | 2.061 | 12.81 | 1.78 | 3.9 | 96.1 | 0.0 | 0.32 | 1.25 | 0.66 | 0.83 | 2.70 | 67921 | 8227 | 68 | 0 | 43 | 0 | 0 | logfile |
✔ | 7VXK | 32182 | 2024-03-21 | 2021-11-12 | 3.7 | 4.06 | — | 3.9 | 0.002 | 0.50 | 0.0 | 0.04 | 7.67 | 0.00 | 2.235 | 7.48 | 0.00 | 3.8 | 96.1 | 0.1 | -2.36 | 0.55 | 0.60 | 1.12 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 14.61 | 0.00 | 2.092 | 15.29 | 2.27 | 4.7 | 95.3 | 0.0 | -0.32 | 1.69 | 0.62 | 0.74 | 1.39 | 30079 | 3814 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W55 | 32314 | 2024-03-17 | 2021-11-29 | 2.8 | 2.24 | — | 3.0 | 0.005 | 0.72 | 1.0 | 0.06 | 11.82 | 0.00 | 2.126 | 2.62 | 0.50 | 2.1 | 97.9 | 0.0 | 0.64 | 0.73 | 0.73 | 3.93 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 15.52 | 0.01 | 1.977 | 9.08 | 2.18 | 3.2 | 96.8 | 0.0 | 0.75 | 0.73 | 0.74 | 0.76 | 3.64 | 18334 | 1167 | 6 | 0 | 0 | 0 | 9112 | logfile |
✔ | 6ZYD | 11557 | 2024-03-22 | 2020-07-31 | 3.0 | 3.62 | 2.76 | 3.4 | 0.017 | 1.20 | 0.0 | 0.12 | 19.71 | 0.01 | 2.269 | 4.88 | 0.00 | 5.1 | 94.9 | 0.0 | -3.12 | 0.75 | 0.77 | 4.36 | 3.4 | 0.059 | 2.56 | 0.0 | 0.17 | 20.87 | 0.02 | 1.761 | 56.86 | 14.22 | 21.7 | 78.3 | 0.0 | -6.19 | 1.46 | 0.79 | 0.86 | 3.30 | 31423 | 1792 | 14 | 0 | 476 | 0 | 14490 | logfile |
✔ | 7T5P | 25706 | 2024-03-16 | 2021-12-13 | 3.4 | 3.23 | 3.35 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 17.85 | 0.00 | 1.971 | 15.30 | 0.39 | 4.7 | 95.3 | 0.0 | 1.09 | 0.76 | 0.73 | 0.61 | 2.2 | 0.003 | 0.61 | 0.0 | 0.04 | 18.04 | 0.00 | 1.948 | 15.97 | 2.58 | 4.7 | 95.3 | 0.0 | 1.62 | 0.41 | 0.77 | 0.74 | 0.45 | 13597 | 822 | 2 | 0 | 0 | 0 | 6866 | logfile |
✔ | 7VWY | 32165 | 2024-03-22 | 2021-11-12 | 4.57 | 3.68 | — | 3.8 | 0.006 | 0.94 | 0.0 | 0.05 | 18.49 | 0.01 | 2.039 | 12.27 | 0.86 | 7.9 | 91.9 | 0.2 | -4.94 | 0.72 | 0.69 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 17.62 | 0.00 | 1.928 | 13.67 | 0.06 | 7.7 | 92.2 | 0.0 | -2.32 | 1.44 | 0.74 | 0.71 | — | 34628 | 4061 | 10 | 129 | 3 | 0 | 0 | logfile |
✔ | 7C97 | 30307 | 2024-03-23 | 2020-06-05 | 3.68 | 3.77 | — | 3.7 | 0.007 | 0.81 | 0.0 | 0.04 | 18.52 | 0.00 | 2.009 | 33.78 | 11.86 | 12.3 | 87.6 | 0.1 | -5.70 | 0.72 | 0.81 | 1.67 | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 18.97 | 0.00 | 1.905 | 43.71 | 4.84 | 10.8 | 89.2 | 0.0 | -2.71 | 1.97 | 0.72 | 0.82 | 1.44 | 35581 | 4164 | 12 | 111 | 3 | 0 | 532 | logfile |
✔ | 5K11 | 8193 | 2024-03-15 | 2016-05-17 | 3.8 | 4.50 | — | 3.8 | 0.012 | 1.23 | 0.0 | 0.06 | 12.12 | 0.01 | 2.061 | 29.53 | 0.30 | 6.1 | 93.4 | 0.5 | -4.89 | 0.80 | 0.59 | 1.53 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 15.80 | 0.00 | 2.110 | 26.12 | 2.11 | 5.4 | 94.6 | 0.0 | -0.24 | 1.56 | 0.90 | 0.85 | 1.22 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7VL9 | 32021 | 2024-03-14 | 2021-10-02 | 2.6 | 2.71 | — | 2.8 | 0.007 | 0.96 | 2.0 | 0.06 | 13.15 | 0.01 | 2.176 | 8.25 | 0.10 | 2.9 | 97.1 | 0.0 | 0.32 | 0.68 | 0.79 | 4.33 | 2.7 | 0.003 | 0.54 | 0.0 | 0.04 | 16.02 | 0.00 | 2.179 | 5.90 | 2.29 | 2.7 | 97.3 | 0.0 | 1.41 | 0.53 | 0.67 | 0.81 | 3.49 | 9605 | 1214 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SLP | 25197 | 2024-03-10 | 2021-10-24 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.22 | 1.0 | 0.07 | 19.40 | 0.01 | 2.221 | 7.09 | 1.77 | 4.2 | 95.3 | 0.5 | -3.76 | 0.62 | 0.56 | — | 4.1 | 0.002 | 0.63 | 0.0 | 0.04 | 17.72 | 0.00 | 2.200 | 9.52 | 0.00 | 4.6 | 95.4 | 0.0 | 0.09 | 1.46 | 0.70 | 0.70 | — | 5176 | 561 | 4 | 37 | 0 | 0 | 0 | logfile |
✔ | 7X9Y | 33085 | 2024-03-14 | 2022-03-16 | 3.1 | 2.46 | — | 2.2 | 0.003 | 0.49 | 1.0 | 0.04 | 12.62 | 0.00 | 1.932 | 4.86 | 0.31 | 3.0 | 97.0 | 0.0 | 2.03 | 0.73 | 0.73 | 1.91 | 2.1 | 0.003 | 0.62 | 0.0 | 0.04 | 15.95 | 0.00 | 2.238 | 10.67 | 3.16 | 3.0 | 97.0 | 0.0 | 1.30 | 0.54 | 0.74 | 0.77 | 1.67 | 8982 | 1137 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WRU | 21888 | 2024-03-17 | 2020-04-30 | 3.1 | 3.22 | 3.11 | 3.2 | 0.008 | 1.07 | 8.0 | 0.06 | 24.41 | 0.01 | 2.010 | 11.72 | 1.39 | 8.1 | 91.9 | 0.0 | -3.77 | 0.78 | 0.85 | 3.18 | 3.2 | 0.006 | 0.67 | 0.0 | 0.04 | 22.90 | 0.00 | 2.058 | 5.75 | 3.88 | 6.2 | 93.8 | 0.0 | -2.18 | 1.04 | 0.78 | 0.87 | 2.91 | 81693 | 2832 | 29 | 2777 | 1 | 0 | 0 | logfile |
✔ | 8HDP | 34677 | 2024-03-11 | 2022-11-05 | 3.2 | 3.72 | 3.07 | 3.5 | 0.003 | 0.76 | 0.0 | 0.08 | 12.51 | 0.00 | 2.006 | 7.86 | 0.57 | 2.7 | 97.3 | 0.0 | -1.79 | 0.67 | 0.75 | 1.99 | 3.5 | 0.003 | 0.78 | 0.0 | 0.06 | 15.39 | 0.00 | 2.154 | 12.64 | 2.62 | 3.0 | 97.0 | 0.0 | 0.71 | 1.76 | 0.69 | 0.81 | 2.38 | 8282 | 1041 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 8DAW | 27278 | 2024-03-22 | 2022-06-14 | 3.6 | 4.11 | 4.00 | 4.0 | 0.004 | 0.98 | 9.0 | 0.20 | 11.53 | 0.00 | 1.311 | 10.04 | 0.48 | 5.3 | 94.6 | 0.0 | 1.50 | 0.82 | 0.78 | 1.16 | 4.0 | 0.005 | 0.69 | 0.0 | 0.04 | 13.65 | 0.00 | 2.099 | 11.69 | 1.73 | 5.5 | 94.5 | 0.0 | 0.55 | 0.49 | 0.83 | 0.80 | 1.17 | 34848 | 4418 | 19 | 0 | 14 | 0 | 0 | logfile |