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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HJQ | 0236 | 2024-04-11 | 2018-09-04 | 4.1 | 4.38 | 4.03 | 4.1 | 0.006 | 0.94 | 0.0 | 0.06 | 12.72 | 0.01 | 1.406 | 4.81 | 0.13 | 5.6 | 94.3 | 0.1 | -3.06 | 0.83 | 0.87 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 11.50 | 0.00 | 2.011 | 8.76 | 0.00 | 4.8 | 95.2 | 0.0 | -0.46 | 1.65 | 0.83 | 0.87 | — | 22530 | 2871 | 27 | 0 | 42 | 0 | 0 | logfile |
✔ | 6Z1U | 11040 | 2024-04-07 | 2020-05-14 | 3.47 | 3.57 | 3.25 | 3.5 | 0.008 | 0.74 | 0.0 | 0.05 | 14.97 | 0.00 | 1.905 | 11.83 | 0.00 | 8.9 | 91.1 | 0.0 | -1.62 | 0.68 | 0.83 | 2.33 | 3.5 | 0.006 | 0.58 | 0.0 | 0.04 | 15.78 | 0.00 | 1.652 | 9.30 | 0.86 | 6.1 | 93.9 | 0.0 | -0.32 | 0.37 | 0.68 | 0.85 | 2.17 | 65073 | 4239 | 32 | 0 | 11 | 17 | 32803 | logfile |
✔ | 7YAD | 33709 | 2024-04-06 | 2022-06-27 | 2.66 | 2.45 | 2.92 | 2.2 | 0.003 | 0.55 | 0.0 | 0.04 | 12.51 | 0.00 | 2.165 | 5.84 | 0.00 | 4.5 | 95.3 | 0.1 | -1.22 | 0.71 | 0.77 | 3.55 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 14.79 | 0.00 | 2.176 | 6.52 | 2.65 | 4.9 | 94.9 | 0.2 | -1.13 | 2.15 | 0.74 | 0.81 | 3.00 | 6728 | 848 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6RDX | 4834 | 2024-04-05 | 2019-04-12 | 3.9 | 3.93 | 3.89 | 3.9 | 0.010 | 1.05 | 0.0 | 0.06 | 15.09 | 0.01 | 2.050 | 6.72 | 0.55 | 5.8 | 94.0 | 0.2 | -4.32 | 0.63 | 0.79 | 1.46 | 3.9 | 0.003 | 0.78 | 1.0 | 0.04 | 16.74 | 0.00 | 1.884 | 14.59 | 3.37 | 5.0 | 94.8 | 0.1 | -0.39 | 1.23 | 0.64 | 0.81 | 1.08 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 8QCA | 18326 | 2024-04-09 | 2023-08-25 | 2.84 | 3.04 | 2.86 | 3.1 | 0.003 | 0.46 | 0.0 | 0.04 | 13.84 | 0.00 | 2.179 | 4.24 | 0.00 | 2.5 | 97.5 | 0.0 | 0.77 | 0.63 | 0.77 | 3.04 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 15.65 | 0.00 | 2.082 | 14.60 | 1.65 | 3.3 | 96.7 | 0.0 | 0.94 | 0.28 | 0.70 | 0.84 | 2.43 | 17573 | 2326 | 6 | 4 | 0 | 0 | 117 | logfile |
✔ | 8FNE | 29310 | 2024-04-15 | 2022-12-27 | 3.9 | 4.66 | — | 4.1 | 0.018 | 1.78 | 0.0 | 0.10 | 11.33 | 0.01 | 2.452 | 0.27 | 0.00 | 1.0 | 99.0 | 0.0 | 0.31 | 0.56 | 0.44 | 0.56 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 16.16 | 0.01 | 1.969 | 17.76 | 2.88 | 4.8 | 95.2 | 0.0 | -0.30 | 1.63 | 0.66 | 0.72 | 0.71 | 33508 | 2148 | 8 | 0 | 0 | 0 | 16644 | logfile |
✔ | 6REE | 4851 | 2024-04-05 | 2019-04-12 | 3.1 | 3.13 | — | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 14.21 | 0.01 | 2.220 | 5.17 | 0.14 | 4.4 | 95.5 | 0.1 | -3.82 | 0.71 | 0.83 | 2.80 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.81 | 0.00 | 1.923 | 8.96 | 2.15 | 3.7 | 96.2 | 0.1 | 0.25 | 0.50 | 0.72 | 0.87 | 2.43 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6QDW | 4531 | 2024-04-13 | 2019-01-03 | 2.83 | 2.94 | 2.82 | 2.9 | 0.013 | 1.10 | 0.0 | 0.06 | 24.58 | 0.01 | 1.901 | 6.27 | 1.25 | 7.1 | 92.7 | 0.2 | -4.19 | 0.71 | 0.83 | 2.54 | 2.9 | 0.004 | 0.63 | 0.0 | 0.04 | 24.24 | 0.00 | 2.053 | 10.24 | 3.91 | 5.5 | 94.5 | 0.0 | -1.14 | 1.27 | 0.77 | 0.89 | 3.24 | 90690 | 3127 | 32 | 3081 | 0 | 0 | 0 | logfile |
✔ | 6oEE | 20020 | 2024-04-13 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 17.99 | 0.00 | 2.232 | 11.49 | 4.24 | 12.8 | 87.2 | 0.0 | -0.94 | 0.96 | 0.35 | 0.75 | 0.75 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQM | 11368 | 2024-04-12 | 2020-07-10 | 3.29 | 3.42 | — | 3.3 | 0.009 | 0.86 | 0.0 | 0.05 | 15.95 | 0.00 | 1.787 | 12.43 | 0.00 | 8.1 | 91.9 | 0.0 | -1.08 | 0.73 | 0.82 | 2.58 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 16.20 | 0.00 | 1.782 | 8.67 | 0.89 | 3.5 | 96.5 | 0.0 | 0.47 | 0.39 | 0.71 | 0.82 | 2.05 | 80462 | 5155 | 42 | 0 | 16 | 17 | 40460 | logfile |
✔ | 8D8Q | 27254 | 2024-04-05 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.012 | 1.23 | 0.0 | 0.05 | 11.02 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 12.90 | 0.00 | 2.189 | 12.92 | 0.00 | 4.9 | 95.1 | 0.0 | -0.62 | 1.01 | 0.67 | 0.75 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2024-04-12 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 6W1N | 21513 | 2024-04-05 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.18 | 0.00 | 2.112 | 12.42 | 2.20 | 3.1 | 96.9 | 0.0 | 0.78 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 6REB | 4848 | 2024-04-05 | 2019-04-12 | 3.2 | 3.24 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.40 | 0.37 | 4.8 | 95.1 | 0.1 | -3.95 | 0.70 | 0.84 | 3.18 | 3.3 | 0.003 | 0.64 | 1.0 | 0.04 | 15.80 | 0.00 | 2.044 | 10.48 | 2.17 | 3.6 | 96.3 | 0.1 | 0.03 | 1.15 | 0.71 | 0.87 | 2.46 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7Y3G | 33594 | 2024-04-06 | 2022-06-10 | 2.77 | 2.32 | 2.89 | 2.1 | 0.004 | 0.66 | 0.0 | 0.04 | 16.44 | 0.01 | 2.029 | 7.02 | 3.04 | 3.9 | 96.1 | 0.0 | 0.49 | 0.79 | 0.81 | 2.50 | 2.1 | 0.003 | 0.60 | 0.0 | 0.04 | 16.61 | 0.00 | 2.139 | 5.11 | 3.86 | 3.4 | 96.6 | 0.0 | 0.84 | 1.15 | 0.80 | 0.82 | 2.04 | 7864 | 1001 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z1R | 11039 | 2024-04-08 | 2020-05-14 | 3.29 | 3.42 | 3.09 | 3.3 | 0.007 | 0.71 | 0.0 | 0.04 | 15.28 | 0.00 | 1.890 | 9.22 | 0.00 | 6.6 | 93.4 | 0.0 | -1.25 | 0.69 | 0.83 | 2.88 | 3.3 | 0.005 | 0.56 | 0.0 | 0.04 | 16.04 | 0.00 | 1.683 | 8.04 | 0.82 | 4.7 | 95.3 | 0.0 | 0.05 | 1.12 | 0.70 | 0.86 | 2.52 | 65754 | 4278 | 32 | 0 | 11 | 17 | 33137 | logfile |
✔ | 7TDT | 25838 | 2024-04-08 | 2022-01-03 | 4.0 | 4.13 | — | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 13.40 | 0.00 | 1.908 | 10.09 | 0.00 | 8.2 | 91.7 | 0.1 | -0.53 | 0.63 | 0.69 | — | 4.0 | 0.003 | 0.79 | 0.0 | 0.04 | 15.88 | 0.00 | 2.135 | 15.05 | 2.31 | 9.0 | 91.0 | 0.0 | -0.94 | 1.33 | 0.64 | 0.72 | — | 14444 | 1818 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RE6 | 4843 | 2024-04-05 | 2019-04-12 | 3.4 | 3.45 | 3.43 | 3.4 | 0.010 | 0.94 | 0.0 | 0.06 | 14.50 | 0.01 | 2.163 | 5.75 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.65 | 0.77 | 2.31 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 16.16 | 0.00 | 1.928 | 10.85 | 2.51 | 4.0 | 95.9 | 0.1 | -0.08 | 1.21 | 0.68 | 0.84 | 1.92 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7URT | 26718 | 2024-04-05 | 2022-04-22 | 2.39 | 2.51 | 2.52 | 2.5 | 0.008 | 0.96 | 0.0 | 0.07 | 13.99 | 0.01 | 0.512 | 6.62 | 1.60 | 0.9 | 99.1 | 0.0 | 1.22 | 0.71 | 0.82 | 4.21 | 2.5 | 0.037 | 3.41 | 17.0 | 0.29 | 25.51 | 0.01 | 0.387 | 10.75 | 2.97 | 1.5 | 98.5 | 0.0 | 1.74 | 1.11 | 0.69 | 0.81 | 2.97 | 107880 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 8A8V | 15241 | 2024-04-13 | 2022-06-24 | 3.34 | 3.62 | 3.37 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 15.57 | 0.01 | 2.208 | 8.03 | 0.11 | 3.5 | 96.5 | 0.0 | -0.58 | 0.75 | 0.79 | 1.81 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.76 | 0.00 | 2.171 | 11.44 | 2.00 | 3.1 | 96.9 | 0.0 | 0.72 | 0.40 | 0.77 | 0.83 | 1.53 | 27164 | 3396 | 13 | 0 | 33 | 0 | 0 | logfile |