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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EPX | 28534 | 2024-04-09 | 2022-10-06 | 3.15 | 3.30 | 3.06 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 24.05 | 0.00 | 1.297 | 7.63 | 4.99 | 5.1 | 94.9 | 0.0 | -0.23 | 0.79 | 0.84 | 0.94 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 23.81 | 0.00 | 2.172 | 6.76 | 4.63 | 5.8 | 94.2 | 0.0 | 0.42 | 0.18 | 0.79 | 0.84 | 1.14 | 15457 | 1672 | 14 | 144 | 2 | 0 | 0 | logfile |
✔ | 7PV2 | 13664 | 2024-04-12 | 2021-10-01 | 3.2 | 3.39 | — | 3.3 | 0.011 | 0.71 | 0.0 | 0.08 | 14.85 | 0.00 | 1.971 | 4.86 | 0.00 | 3.9 | 96.1 | 0.0 | -3.84 | 0.75 | 0.82 | 3.34 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 16.70 | 0.00 | 2.155 | 5.71 | 1.48 | 3.2 | 96.8 | 0.0 | 0.02 | 0.58 | 0.74 | 0.86 | 2.80 | 25440 | 3084 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SK3 | 25171 | 2024-04-08 | 2021-10-19 | 3.8 | 4.06 | — | 4.0 | 0.005 | 0.68 | 0.0 | 0.07 | 13.11 | 0.00 | 2.143 | 5.05 | 0.00 | 5.0 | 95.0 | 0.0 | 0.15 | 0.69 | 0.82 | 2.20 | 4.0 | 0.003 | 0.48 | 0.0 | 0.04 | 13.85 | 0.00 | 2.121 | 7.25 | 1.65 | 4.4 | 95.6 | 0.0 | 0.32 | 0.34 | 0.69 | 0.82 | 1.65 | 13294 | 831 | 7 | 0 | 8 | 0 | 6491 | logfile |
✔ | 7P3Q | 13182 | 2024-04-07 | 2021-07-08 | 3.12 | 3.23 | 3.11 | 3.2 | 0.009 | 1.34 | 0.0 | 0.07 | 18.91 | 0.01 | 2.218 | 11.33 | 0.40 | 4.5 | 95.5 | 0.0 | 0.44 | 0.68 | 0.81 | 1.87 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 17.03 | 0.00 | 2.104 | 15.14 | 1.60 | 4.1 | 95.9 | 0.0 | 1.02 | 0.81 | 0.69 | 0.86 | 1.82 | 9632 | 1176 | 16 | 0 | 24 | 0 | 0 | logfile |
✔ | 7UUR | 26801 | 2024-04-08 | 2022-04-28 | 1.67 | 1.76 | 1.67 | 1.8 | 0.061 | 2.45 | 3.0 | 0.98 | 14.57 | 0.01 | 1.674 | 7.19 | 0.44 | 2.5 | 97.2 | 0.2 | -0.89 | 0.76 | 0.87 | 7.87 | 1.8 | 0.006 | 2.39 | 0.0 | 0.09 | 14.61 | 0.00 | 1.579 | 11.53 | 0.36 | 2.1 | 97.9 | 0.0 | 0.34 | 0.28 | 0.76 | 0.87 | 7.62 | 13683 | 1668 | 12 | 0 | 18 | 603 | 0 | logfile |
✔ | 7TYM | 26185 | 2024-04-08 | 2022-02-13 | 3.4 | 3.43 | — | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.175 | 8.12 | 0.00 | 7.1 | 92.8 | 0.1 | -1.35 | 0.73 | 0.81 | 2.62 | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 16.43 | 0.00 | 2.169 | 7.28 | 2.67 | 7.4 | 92.6 | 0.0 | -1.55 | 1.11 | 0.72 | 0.81 | 3.08 | 12112 | 1542 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D44 | 27174 | 2024-04-07 | 2022-06-01 | 2.8 | 3.00 | 2.84 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 16.99 | 0.01 | 2.232 | 6.47 | 1.73 | 5.7 | 94.3 | 0.0 | 0.38 | 0.71 | 0.81 | 3.53 | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 17.55 | 0.00 | 2.231 | 7.81 | 2.09 | 5.8 | 94.2 | 0.0 | 1.31 | 1.09 | 0.68 | 0.81 | 2.84 | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ToV | 26039 | 2024-04-11 | 2022-01-24 | 3.16 | 3.39 | — | 3.2 | 0.014 | 1.80 | 5.0 | 0.10 | 12.15 | 0.01 | 2.515 | 0.07 | 0.89 | 5.8 | 93.7 | 0.4 | -0.81 | 0.83 | 0.86 | 4.13 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 12.81 | 0.00 | 2.114 | 4.23 | 1.11 | 4.0 | 95.9 | 0.1 | 0.33 | 1.19 | 0.84 | 0.87 | 3.32 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7RBT | 24401 | 2024-04-07 | 2021-07-06 | 3.08 | 2.86 | — | 2.9 | 0.007 | 0.76 | 0.0 | 0.05 | 14.73 | 0.00 | 2.093 | 18.60 | 0.70 | 9.1 | 90.9 | 0.0 | -2.82 | 0.59 | 0.76 | 2.17 | 3.0 | 0.003 | 0.70 | 0.0 | 0.04 | 16.78 | 0.00 | 2.093 | 11.51 | 3.41 | 3.9 | 96.1 | 0.0 | -0.82 | 0.48 | 0.59 | 0.76 | 2.00 | 10881 | 1386 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VRA | 21365 | 2024-04-06 | 2020-02-07 | 3.3 | 3.58 | — | 3.4 | 0.008 | 1.03 | 4.0 | 0.06 | 15.67 | 0.01 | 2.214 | 6.31 | 0.80 | 8.5 | 91.5 | 0.0 | -3.93 | 0.84 | 0.85 | 2.53 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 16.44 | 0.00 | 2.097 | 9.63 | 1.36 | 5.6 | 94.4 | 0.0 | -0.89 | 0.49 | 0.83 | 0.86 | 2.01 | 57744 | 7208 | 20 | 0 | 16 | 0 | 0 | logfile |
✔ | 6oWo | 20215 | 2024-04-08 | 2019-05-10 | 3.2 | 3.34 | 3.21 | 3.3 | 0.009 | 0.99 | 0.0 | 0.05 | 9.50 | 0.01 | 2.261 | 3.86 | 0.25 | 3.3 | 96.6 | 0.1 | -4.78 | 0.82 | 0.87 | 3.33 | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 13.44 | 0.00 | 2.184 | 7.54 | 2.03 | 2.8 | 97.1 | 0.1 | 0.94 | 1.31 | 0.82 | 0.88 | 2.54 | 14276 | 1786 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DKE | 27488 | 2024-04-05 | 2022-07-05 | 3.18 | 3.43 | 3.12 | 3.4 | 0.003 | 0.74 | 2.0 | 0.05 | 14.40 | 0.01 | 2.179 | 7.36 | 0.83 | 6.2 | 93.8 | 0.0 | -0.95 | 0.57 | 0.85 | 3.68 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 15.63 | 0.00 | 2.246 | 5.75 | 2.07 | 6.0 | 94.0 | 0.0 | 0.21 | 0.26 | 0.57 | 0.86 | 3.45 | 4369 | 553 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZD | 20957 | 2024-04-17 | 2019-11-14 | 3.4 | 3.56 | — | 3.4 | 0.007 | 0.84 | 0.0 | 0.06 | 15.38 | 0.01 | 2.258 | 6.10 | 0.31 | 5.7 | 94.3 | 0.0 | -4.30 | 0.77 | 0.84 | 2.82 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 16.05 | 0.00 | 2.140 | 9.06 | 1.79 | 4.9 | 95.1 | 0.0 | -1.54 | 0.44 | 0.78 | 0.86 | 2.54 | 42822 | 5374 | 16 | 0 | 14 | 0 | 0 | logfile |
✔ | 7TF8 | 25865 | 2024-04-12 | 2022-01-06 | 3.36 | 3.60 | 3.29 | 3.4 | 0.005 | 0.78 | 0.0 | 0.06 | 14.72 | 0.01 | 2.280 | 2.75 | 0.07 | 3.4 | 96.6 | 0.0 | -0.90 | 0.85 | 0.85 | 2.93 | 3.4 | 0.003 | 0.51 | 0.0 | 0.04 | 12.76 | 0.00 | 2.142 | 5.92 | 0.69 | 3.0 | 97.0 | 0.0 | 0.25 | 1.12 | 0.86 | 0.87 | 2.68 | 25732 | 3153 | 22 | 0 | 78 | 0 | 0 | logfile |
✔ | 7SV7 | 25445 | 2024-04-07 | 2021-11-18 | 3.8 | 3.26 | — | 3.9 | 0.003 | 0.94 | 0.0 | 0.04 | 12.83 | 0.00 | 2.003 | 1.99 | 0.69 | 2.2 | 97.8 | 0.0 | -0.82 | 0.60 | 0.81 | 2.35 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 15.04 | 0.00 | 1.937 | 5.57 | 2.97 | 3.4 | 96.6 | 0.0 | 0.76 | 0.54 | 0.63 | 0.82 | 1.78 | 9673 | 1173 | 3 | 0 | 32 | 0 | 0 | logfile |
✔ | 7ZJ6 | 14742 | 2024-04-08 | 2022-04-08 | 2.6 | 2.32 | 2.61 | 2.6 | 0.013 | 1.77 | 0.0 | 0.09 | 18.23 | 0.01 | 2.524 | 1.04 | 0.46 | 3.9 | 96.1 | 0.0 | -1.99 | 0.67 | 0.82 | 4.01 | 2.6 | 0.003 | 0.62 | 0.0 | 0.04 | 15.58 | 0.00 | 2.239 | 3.20 | 1.78 | 1.8 | 98.2 | 0.0 | 0.33 | 1.18 | 0.71 | 0.83 | 3.79 | 12282 | 1482 | 18 | 0 | 48 | 0 | 0 | logfile |
✔ | 7ooA | 13008 | 2024-04-09 | 2021-05-27 | 2.7 | 2.63 | 2.63 | 2.6 | 0.005 | 0.66 | 0.0 | 0.05 | 21.92 | 0.00 | 2.256 | 5.81 | 0.00 | 0.4 | 99.6 | 0.0 | 2.71 | 0.71 | 0.86 | 4.30 | 2.6 | 0.003 | 0.46 | 0.0 | 0.04 | 15.74 | 0.00 | 2.229 | 5.71 | 1.48 | 1.2 | 98.8 | 0.0 | 1.75 | 1.12 | 0.71 | 0.88 | 4.00 | 15610 | 1834 | 14 | 0 | 35 | 0 | 0 | logfile |
✔ | 7ToU | 26038 | 2024-04-12 | 2022-01-24 | 3.24 | 3.49 | — | 3.3 | 0.014 | 1.82 | 8.0 | 0.11 | 12.99 | 0.01 | 2.517 | 0.18 | 1.20 | 6.2 | 93.2 | 0.7 | -1.00 | 0.84 | 0.85 | 3.52 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 13.38 | 0.00 | 2.126 | 5.32 | 1.31 | 4.4 | 95.6 | 0.0 | 0.39 | 0.57 | 0.86 | 0.87 | 2.66 | 24687 | 3050 | 20 | 0 | 61 | 0 | 0 | logfile |
✔ | 7ToZ | 26042 | 2024-04-12 | 2022-01-24 | 4.07 | 4.80 | — | 4.0 | 0.014 | 1.84 | 11.0 | 0.10 | 14.63 | 0.02 | 2.509 | 0.68 | 2.87 | 8.7 | 90.4 | 0.8 | -1.96 | 0.85 | 0.79 | — | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 13.01 | 0.00 | 2.090 | 15.63 | 0.00 | 7.6 | 92.4 | 0.1 | -0.83 | 0.56 | 0.85 | 0.80 | — | 24470 | 3026 | 20 | 0 | 60 | 0 | 0 | logfile |
✔ | 7TAP | 25780 | 2024-04-11 | 2021-12-21 | 2.8 | 3.00 | — | 3.0 | 0.013 | 1.47 | 4.0 | 0.07 | 15.28 | 0.01 | 2.225 | 8.19 | 1.37 | 1.3 | 98.6 | 0.1 | 0.26 | 0.64 | 0.81 | 3.41 | 3.0 | 0.004 | 0.55 | 0.0 | 0.04 | 15.98 | 0.00 | 2.122 | 9.60 | 1.67 | 1.4 | 98.5 | 0.0 | 1.41 | 2.34 | 0.66 | 0.84 | 3.18 | 22520 | 2915 | 22 | 0 | 8 | 0 | 0 | logfile |