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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7S4V | 24835 | 2024-04-08 | 2021-09-09 | 3.28 | 3.87 | — | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 19.69 | 0.00 | 2.202 | 4.81 | 0.00 | 5.0 | 95.0 | 0.0 | -1.46 | 0.80 | 0.80 | 2.24 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 20.28 | 0.00 | 2.251 | 5.41 | 0.70 | 4.1 | 95.9 | 0.0 | -0.42 | 0.55 | 0.85 | 0.87 | 2.08 | 12215 | 1122 | 4 | 145 | 0 | 0 | 0 | logfile |
✔ | 7V7E | 31768 | 2024-04-12 | 2021-08-21 | 2.9 | 3.84 | — | 3.2 | 0.004 | 0.62 | 0.0 | 0.05 | 14.06 | 0.00 | 2.106 | 7.79 | 0.00 | 5.0 | 95.0 | 0.1 | -0.18 | 0.87 | 0.84 | 2.51 | 3.2 | 0.004 | 0.59 | 0.0 | 0.05 | 14.18 | 0.00 | 2.171 | 8.39 | 1.40 | 5.1 | 94.8 | 0.1 | -0.06 | 1.14 | 0.87 | 0.85 | 2.04 | 25340 | 3093 | 40 | 0 | 82 | 0 | 0 | logfile |
✔ | 7D4G | 30573 | 2024-04-05 | 2020-09-23 | 3.9 | 4.13 | — | 4.1 | 0.006 | 1.06 | 1.0 | 0.06 | 9.87 | 0.01 | 1.917 | 36.47 | 0.00 | 10.7 | 88.9 | 0.4 | -3.84 | 0.56 | 0.52 | 1.34 | 4.1 | 0.004 | 0.85 | 0.0 | 0.05 | 15.49 | 0.00 | 2.183 | 22.98 | 4.63 | 12.3 | 87.4 | 0.2 | -2.13 | 3.65 | 0.65 | 0.71 | 1.92 | 3925 | 502 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DZY | 30921 | 2024-04-10 | 2021-01-26 | 3.6 | 3.83 | 3.38 | 3.1 | 0.020 | 2.12 | 0.0 | 0.00 | 4.32 | 0.01 | 1.980 | 3.14 | 0.00 | 3.7 | 95.4 | 0.9 | -0.42 | 0.43 | 0.27 | — | 3.3 | 0.003 | 0.83 | 0.0 | 0.00 | 5.21 | 0.00 | 2.105 | 3.02 | 0.00 | 10.5 | 89.3 | 0.2 | -2.46 | 2.13 | 0.71 | 0.70 | — | 18708 | 4677 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PM4 | 20386 | 2024-04-08 | 2019-07-01 | 4.0 | 5.19 | — | 4.0 | 0.007 | 0.96 | 0.0 | 0.05 | 13.64 | 0.01 | 2.236 | 7.62 | 0.00 | 9.9 | 90.1 | 0.0 | -4.33 | 0.76 | 0.85 | — | 3.8 | 0.003 | 0.81 | 0.0 | 0.04 | 12.30 | 0.00 | 2.153 | 17.27 | 1.46 | 6.7 | 93.3 | 0.0 | -1.13 | 1.19 | 0.77 | 0.86 | — | 14055 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 8CGG | 16642 | 2024-04-05 | 2023-02-04 | 2.5 | 2.67 | 2.48 | 2.7 | 0.011 | 1.67 | 0.0 | 0.08 | 16.62 | 0.01 | 2.637 | 6.41 | 0.00 | 11.5 | 88.5 | 0.0 | -5.62 | 0.55 | 0.94 | 8.29 | 2.7 | 0.004 | 0.82 | 0.0 | 0.04 | 17.24 | 0.00 | 2.623 | 0.78 | 0.40 | 4.9 | 95.1 | 0.0 | -4.88 | 0.93 | 0.51 | 0.92 | 7.91 | 2710 | 400 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AST | 11904 | 2024-04-15 | 2020-10-28 | 4.0 | 3.84 | — | 3.6 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.62 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.6 | 0.016 | 0.98 | 0.0 | 0.05 | 17.70 | 0.01 | 2.094 | 26.83 | 2.78 | 15.8 | 83.9 | 0.3 | -3.72 | 1.41 | 0.63 | 0.49 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 7V8B | 31796 | 2024-04-06 | 2021-08-22 | 3.2 | 3.85 | — | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 15.61 | 0.00 | 2.308 | 6.16 | 0.00 | 5.0 | 94.8 | 0.1 | -0.34 | 0.79 | 0.85 | 2.31 | 3.6 | 0.002 | 0.58 | 0.0 | 0.04 | 15.54 | 0.00 | 2.188 | 6.09 | 1.57 | 5.2 | 94.7 | 0.1 | 0.28 | 1.16 | 0.79 | 0.88 | 2.36 | 6650 | 797 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 7YGB | 33814 | 2024-04-06 | 2022-07-11 | 2.62 | 3.15 | 2.70 | 2.9 | 0.007 | 0.52 | 0.0 | 0.03 | 24.24 | 0.00 | 2.079 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.84 | — | 2.9 | 0.007 | 0.64 | 0.0 | 0.04 | 23.99 | 0.00 | 1.834 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.92 | 0.92 | — | 8738 | 0 | 5 | 407 | 54 | 0 | 0 | logfile |
✔ | 7V7P | 31777 | 2024-04-12 | 2021-08-21 | 2.9 | 3.73 | — | 3.2 | 0.004 | 0.61 | 0.0 | 0.05 | 13.70 | 0.00 | 2.191 | 5.56 | 0.00 | 4.2 | 95.6 | 0.2 | 0.06 | 0.89 | 0.88 | 2.27 | 3.2 | 0.005 | 0.59 | 0.0 | 0.05 | 14.04 | 0.00 | 2.183 | 6.72 | 1.00 | 4.9 | 95.0 | 0.1 | 0.19 | 1.14 | 0.89 | 0.87 | 2.08 | 25371 | 3096 | 42 | 0 | 84 | 0 | 0 | logfile |
✔ | 6RoW | 4975 | 2024-04-17 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.61 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.004 | 0.68 | 0.0 | 0.04 | 13.65 | 0.00 | 1.945 | 13.20 | 0.05 | 14.3 | 85.5 | 0.1 | -2.60 | 1.48 | 0.82 | 0.73 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✔ | 7NAP | 24277 | 2024-04-10 | 2021-06-22 | 3.2 | 3.90 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.06 | 0.01 | 2.090 | 2.71 | 0.00 | 1.2 | 98.7 | 0.1 | 1.23 | 0.86 | 0.84 | 2.15 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 15.71 | 0.00 | 2.041 | 11.88 | 2.35 | 2.6 | 97.4 | 0.0 | 1.74 | 0.77 | 0.86 | 0.86 | 1.85 | 69762 | 9240 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V87 | 31792 | 2024-04-06 | 2021-08-22 | 3.3 | 3.93 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.05 | 16.49 | 0.00 | 2.167 | 6.58 | 0.00 | 5.4 | 94.6 | 0.0 | -0.21 | 0.79 | 0.84 | 2.44 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 15.78 | 0.00 | 2.046 | 6.50 | 2.57 | 5.4 | 94.6 | 0.0 | 0.21 | 0.33 | 0.79 | 0.86 | 2.39 | 6617 | 797 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7YG8 | 33811 | 2024-04-06 | 2022-07-11 | 2.97 | 3.59 | 3.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.03 | 24.52 | 0.00 | 2.042 | 13.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.82 | — | 3.0 | 0.006 | 0.65 | 0.0 | 0.04 | 24.62 | 0.00 | 1.829 | 19.71 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.91 | 0.89 | — | 8440 | 0 | 3 | 395 | 5 | 0 | 0 | logfile |
✔ | 7USL | 26738 | 2024-04-12 | 2022-04-25 | 2.7 | 2.28 | — | 1.9 | 0.004 | 0.61 | 0.0 | 0.05 | 13.60 | 0.00 | 2.106 | 5.30 | 0.00 | 3.2 | 96.8 | 0.0 | -0.47 | 0.75 | 0.73 | 3.51 | 1.9 | 0.003 | 0.66 | 0.0 | 0.05 | 15.80 | 0.00 | 2.145 | 6.83 | 2.88 | 3.8 | 96.2 | 0.0 | -0.69 | 0.37 | 0.77 | 0.76 | 3.02 | 19065 | 2464 | 10 | 0 | 49 | 0 | 0 | logfile |
✔ | 7EB2 | 31049 | 2024-04-10 | 2021-03-08 | 3.5 | 3.43 | — | 3.4 | 0.007 | 0.76 | 0.0 | 0.11 | 11.77 | 0.00 | 2.092 | 7.56 | 0.00 | 3.6 | 96.4 | 0.0 | -1.24 | 0.79 | 0.74 | 1.53 | 3.4 | 0.003 | 0.91 | 0.0 | 0.06 | 15.40 | 0.00 | 2.139 | 14.65 | 2.63 | 3.4 | 96.5 | 0.0 | 0.03 | 1.03 | 0.81 | 0.76 | 1.31 | 18497 | 2337 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 6S6S | 10104 | 2024-04-06 | 2019-07-03 | 3.9 | 4.02 | 4.04 | 3.9 | 0.023 | 0.97 | 0.0 | 0.08 | 13.25 | 0.00 | 1.660 | 8.49 | 0.00 | 5.4 | 94.6 | 0.0 | -3.05 | 0.72 | 0.84 | 1.45 | 3.9 | 0.003 | 0.81 | 0.0 | 0.05 | 15.65 | 0.00 | 1.776 | 9.79 | 2.93 | 4.7 | 95.3 | 0.0 | -0.72 | 3.23 | 0.73 | 0.84 | 1.34 | 60044 | 7752 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2024-04-05 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 15.97 | 0.00 | 2.278 | 7.54 | 1.01 | 7.0 | 93.0 | 0.0 | -0.88 | 1.30 | 0.30 | 0.04 | 1.02 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7STE | 25426 | 2024-04-13 | 2021-11-12 | 2.73 | 3.42 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.06 | 0.00 | 2.030 | 3.56 | 0.00 | 2.0 | 98.0 | 0.0 | 3.20 | 0.82 | 0.83 | 2.63 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.48 | 0.00 | 1.910 | 6.41 | 0.63 | 2.4 | 97.6 | 0.0 | 2.58 | 1.18 | 0.81 | 0.87 | 3.14 | 28628 | 1774 | 10 | 0 | 6 | 0 | 14379 | logfile |
✔ | 7F63 | 31471 | 2024-04-05 | 2021-06-24 | 3.9 | 4.20 | — | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 13.34 | 0.00 | 2.136 | 12.60 | 0.00 | 8.3 | 91.4 | 0.2 | -2.31 | 0.63 | 0.62 | 1.27 | 4.0 | 0.003 | 0.82 | 0.0 | 0.05 | 16.31 | 0.00 | 2.137 | 17.16 | 4.31 | 11.9 | 87.6 | 0.5 | -3.04 | 1.52 | 0.65 | 0.70 | 1.90 | 3375 | 429 | 3 | 0 | 0 | 0 | 0 | logfile |