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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7X95 | 33067 | 2024-04-06 | 2022-03-15 | 3.9 | 4.89 | 3.86 | 4.3 | 0.003 | 0.50 | 0.0 | 0.04 | 13.80 | 0.00 | 1.979 | 7.18 | 0.00 | 6.4 | 93.6 | 0.0 | -1.00 | 0.79 | 0.71 | 3.07 | 4.3 | 0.005 | 0.64 | 0.0 | 0.04 | 13.71 | 0.00 | 1.994 | 16.04 | 0.84 | 9.3 | 90.7 | 0.0 | -1.23 | 0.87 | 0.81 | 0.79 | 3.13 | 6522 | 427 | 4 | 0 | 2 | 0 | 3176 | logfile |
✔ | 7XX2 | 33498 | 2024-04-15 | 2022-05-28 | 3.6 | 3.49 | 3.64 | 3.3 | 0.006 | 0.95 | 4.0 | 0.06 | 14.51 | 0.01 | 2.033 | 16.70 | 1.27 | 9.9 | 90.0 | 0.0 | -1.28 | 0.86 | 0.82 | 1.65 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 15.89 | 0.00 | 2.154 | 12.06 | 2.45 | 8.8 | 91.2 | 0.0 | -0.50 | 0.48 | 0.86 | 0.82 | 1.15 | 36436 | 4528 | 11 | 0 | 5 | 0 | 0 | logfile |
✔ | 6N23 | 9321 | 2024-04-09 | 2018-11-12 | 3.1 | 3.91 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 9.58 | 0.01 | 2.231 | 2.43 | 0.00 | 3.3 | 96.7 | 0.0 | -5.52 | 0.79 | 0.87 | 4.09 | 3.6 | 0.002 | 0.55 | 0.0 | 0.04 | 12.61 | 0.00 | 2.264 | 5.02 | 1.04 | 2.1 | 97.9 | 0.0 | 1.95 | 2.23 | 0.71 | 0.83 | 2.85 | 14935 | 1815 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7VXU | 32188 | 2024-04-13 | 2021-11-13 | 2.8 | 2.93 | — | 3.3 | 0.006 | 0.69 | 0.0 | 0.05 | 16.64 | 0.01 | 2.193 | 8.52 | 1.34 | 3.2 | 96.8 | 0.0 | 0.49 | 0.72 | 0.87 | 3.33 | 3.3 | 0.004 | 0.66 | 1.0 | 0.05 | 16.79 | 0.00 | 2.180 | 6.99 | 2.31 | 3.3 | 96.6 | 0.0 | 0.63 | 0.24 | 0.72 | 0.87 | 3.08 | 27965 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✔ | 6N9U | 0379 | 2024-04-06 | 2018-12-04 | 3.7 | 3.80 | — | 3.7 | 0.007 | 0.84 | 0.0 | 0.06 | 13.13 | 0.01 | 2.205 | 3.66 | 0.34 | 5.3 | 94.7 | 0.0 | -4.67 | 0.75 | 0.82 | 3.31 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 16.81 | 0.00 | 1.992 | 6.92 | 2.86 | 3.3 | 96.7 | 0.0 | -1.34 | 1.11 | 0.77 | 0.83 | 1.88 | 8822 | 1063 | 7 | 18 | 4 | 0 | 0 | logfile |
✔ | 6HYD | 0308 | 2024-04-08 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 14.74 | 0.00 | 2.155 | 5.43 | 3.61 | 6.4 | 93.4 | 0.2 | -1.27 | 1.74 | 0.76 | 0.79 | 1.67 | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✔ | 7Wo7 | 32641 | 2024-04-05 | 2022-01-20 | 3.8 | 3.99 | — | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 11.24 | 0.00 | 2.163 | 6.93 | 8.82 | 9.7 | 90.3 | 0.0 | -4.70 | 0.72 | 0.74 | 1.98 | 3.9 | 0.005 | 0.76 | 0.0 | 0.05 | 15.27 | 0.01 | 2.085 | 17.63 | 6.07 | 16.2 | 83.8 | 0.0 | -3.31 | 1.79 | 0.75 | 0.77 | 2.07 | 4870 | 634 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7P60 | 13213 | 2024-04-16 | 2021-07-15 | 3.8 | 3.10 | 3.75 | 3.2 | 0.004 | 0.55 | 0.0 | 0.04 | 13.06 | 0.00 | 2.130 | 15.09 | 5.44 | 3.9 | 96.1 | 0.0 | -0.45 | 0.72 | 0.69 | 1.05 | 2.9 | 0.004 | 0.65 | 0.0 | 0.04 | 15.73 | 0.00 | 2.125 | 17.79 | 3.78 | 5.2 | 94.8 | 0.0 | -0.87 | 1.56 | 0.70 | 0.68 | 0.85 | 38406 | 4680 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z2J | 11041 | 2024-04-10 | 2020-05-16 | 4.0 | 4.25 | 3.91 | 4.2 | 0.005 | 0.83 | 0.0 | 0.27 | 16.35 | 0.00 | 1.987 | 3.28 | 0.39 | 7.9 | 92.1 | 0.0 | -3.35 | 0.69 | 0.63 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 17.30 | 0.00 | 1.901 | 12.92 | 1.97 | 10.3 | 89.7 | 0.0 | -2.35 | 1.52 | 0.71 | 0.68 | — | 18876 | 1185 | 8 | 0 | 8 | 0 | 9273 | logfile |
✔ | 7PDH | 13338 | 2024-04-05 | 2021-08-05 | 4.0 | 3.51 | — | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 14.16 | 0.00 | 2.169 | 14.32 | 0.00 | 5.8 | 94.2 | 0.0 | -1.07 | 0.79 | 0.69 | — | 3.2 | 0.002 | 0.69 | 0.0 | 0.04 | 16.53 | 0.00 | 2.198 | 13.98 | 2.08 | 6.2 | 93.8 | 0.0 | -0.70 | 0.86 | 0.79 | 0.70 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AKQ | 15489 | 2024-04-05 | 2022-07-31 | 4.1 | 4.54 | 4.23 | 4.3 | 0.004 | 0.61 | 0.0 | 0.03 | 15.04 | 0.00 | 2.262 | 5.43 | 0.00 | 0.0 | 100.0 | 0.0 | 1.78 | 0.86 | 0.80 | — | 4.3 | 0.005 | 0.72 | 0.0 | 0.03 | 14.67 | 0.00 | 1.883 | 35.62 | 0.00 | 0.5 | 99.5 | 0.0 | 4.28 | 0.80 | 0.88 | 0.83 | — | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 6N25 | 9323 | 2024-04-08 | 2018-11-12 | 2.7 | 3.35 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 9.28 | 0.01 | 2.307 | 2.16 | 0.00 | 2.1 | 97.9 | 0.0 | -6.12 | 0.77 | 0.88 | 4.62 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 14.66 | 0.00 | 2.231 | 5.69 | 1.90 | 2.1 | 97.9 | 0.0 | 1.04 | 3.81 | 0.67 | 0.84 | 3.12 | 13940 | 1690 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7TNK | 26012 | 2024-04-10 | 2022-01-21 | 4.5 | 3.85 | — | 3.8 | 0.005 | 1.01 | 0.0 | 0.05 | 11.81 | 0.01 | 2.244 | 4.82 | 0.40 | 5.0 | 94.9 | 0.1 | -4.97 | 0.71 | 0.73 | — | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 13.07 | 0.00 | 2.132 | 14.12 | 0.00 | 5.2 | 94.8 | 0.0 | -0.22 | 0.93 | 0.72 | 0.74 | — | 18934 | 2419 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5FJ8 | 3178 | 2024-04-16 | 2015-10-06 | 3.9 | 3.97 | — | 4.0 | 0.004 | 1.21 | 0.0 | 0.04 | 13.73 | 0.00 | 2.035 | 13.90 | 4.05 | 16.0 | 82.9 | 1.1 | -4.73 | 0.70 | 0.69 | 0.95 | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 17.43 | 0.01 | 1.955 | 15.23 | 4.85 | 13.7 | 84.9 | 1.3 | -2.88 | 0.99 | 0.76 | 0.77 | 1.11 | 39284 | 4804 | 25 | 47 | 41 | 0 | 0 | logfile |
✔ | 6TNN | 10535 | 2024-04-14 | 2019-12-09 | 3.07 | 3.24 | — | 3.2 | 0.004 | 0.61 | 0.0 | 0.04 | 23.53 | 0.00 | 1.905 | 6.89 | 0.11 | 6.7 | 93.3 | 0.0 | -4.70 | 0.83 | 0.85 | 2.88 | 3.2 | 0.005 | 0.65 | 0.0 | 0.04 | 23.30 | 0.00 | 1.859 | 6.77 | 4.06 | 7.2 | 92.8 | 0.0 | -2.31 | 1.16 | 0.84 | 0.88 | 2.32 | 91840 | 3360 | 40 | 3046 | 224 | 0 | 0 | logfile |
✔ | 7oPL | 13020 | 2024-04-10 | 2021-06-01 | 4.12 | 5.46 | 3.80 | 3.9 | 0.004 | 0.77 | 1.0 | 0.05 | 14.34 | 0.01 | 2.116 | 18.14 | 0.05 | 4.5 | 95.5 | 0.1 | -0.84 | 0.90 | 0.77 | — | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.39 | 0.00 | 2.107 | 19.25 | 0.05 | 5.4 | 94.5 | 0.1 | -0.50 | 0.61 | 0.92 | 0.84 | — | 19743 | 2442 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TNo | 26016 | 2024-04-10 | 2022-01-21 | 4.02 | 3.34 | — | 3.4 | 0.004 | 0.94 | 0.0 | 0.05 | 12.11 | 0.01 | 2.023 | 4.43 | 0.65 | 3.7 | 96.1 | 0.2 | -5.12 | 0.69 | 0.76 | — | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 13.39 | 0.00 | 2.155 | 10.51 | 0.00 | 3.3 | 96.7 | 0.0 | 0.06 | 0.91 | 0.70 | 0.77 | — | 18810 | 2405 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7F5U | 31467 | 2024-04-10 | 2021-06-22 | 4.1 | 4.16 | — | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 14.71 | 0.00 | 2.101 | 24.28 | 0.00 | 12.3 | 87.6 | 0.1 | -4.58 | 0.82 | 0.84 | — | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 14.28 | 0.00 | 2.111 | 15.63 | 0.00 | 8.5 | 91.4 | 0.1 | -1.11 | 0.68 | 0.82 | 0.82 | — | 20744 | 2740 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PX8 | 13691 | 2024-04-11 | 2021-10-08 | 3.27 | 3.27 | — | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 12.52 | 0.01 | 2.236 | 3.53 | 0.05 | 2.2 | 97.8 | 0.0 | -0.37 | 0.78 | 0.86 | 3.66 | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 13.57 | 0.00 | 2.210 | 3.72 | 0.95 | 2.6 | 97.4 | 0.0 | -0.04 | 0.19 | 0.79 | 0.88 | 3.44 | 21409 | 2798 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o77 | 0639 | 2024-04-13 | 2019-03-07 | 3.2 | 3.41 | — | 3.3 | 0.013 | 1.01 | 0.0 | 0.06 | 15.19 | 0.01 | 1.604 | 8.04 | 0.00 | 6.5 | 93.4 | 0.1 | -5.77 | 0.63 | 0.79 | 3.12 | 3.4 | 0.005 | 0.87 | 2.0 | 0.04 | 16.56 | 0.00 | 2.197 | 13.86 | 3.18 | 7.5 | 92.3 | 0.1 | -0.55 | 1.26 | 0.63 | 0.80 | 2.65 | 28884 | 3488 | 8 | 0 | 16 | 0 | 0 | logfile |