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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NM9 | 9398 | 2023-12-12 | 2019-01-10 | 3.38 | 3.86 | — | 3.8 | 0.008 | 0.77 | 3.0 | 0.05 | 15.84 | 0.00 | 1.884 | 18.70 | 0.29 | 12.6 | 87.3 | 0.1 | -4.62 | 0.72 | 0.76 | 1.93 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 17.57 | 0.00 | 1.979 | 14.98 | 0.12 | 8.9 | 91.1 | 0.0 | -1.48 | 1.63 | 0.74 | 0.79 | 1.78 | 22916 | 2640 | 10 | 50 | 4 | 0 | 0 | logfile |
✔ | 6RAL | 4779 | 2023-12-09 | 2019-04-06 | 3.5 | 3.74 | 3.59 | 3.7 | 0.006 | 1.19 | 4.0 | 0.07 | 14.57 | 0.01 | 2.079 | 8.24 | 0.00 | 4.6 | 95.4 | 0.1 | -5.95 | 0.79 | 0.82 | 1.90 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 16.35 | 0.00 | 1.982 | 8.10 | 0.38 | 3.2 | 96.8 | 0.0 | -1.17 | 0.63 | 0.78 | 0.82 | 1.79 | 10127 | 1275 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7P6U | 13232 | 2023-12-16 | 2021-07-18 | 3.9 | 4.03 | — | 3.9 | 0.007 | 1.41 | 7.0 | 0.08 | 13.66 | 0.01 | 2.058 | 7.46 | 0.03 | 6.3 | 93.7 | 0.1 | -4.12 | 0.79 | 0.71 | 0.42 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 14.99 | 0.00 | 2.168 | 21.09 | 0.26 | 5.0 | 95.0 | 0.0 | -0.88 | 1.22 | 0.81 | 0.74 | 0.44 | 36940 | 4632 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7F6i | 31481 | 2023-12-08 | 2021-06-25 | 2.8 | 2.85 | — | 2.8 | 0.008 | 0.92 | 1.0 | 0.07 | 13.56 | 0.00 | 2.227 | 6.36 | 0.50 | 3.8 | 96.2 | 0.0 | 0.20 | 0.71 | 0.82 | 2.94 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 15.44 | 0.00 | 2.216 | 6.90 | 2.24 | 3.2 | 96.8 | 0.0 | 0.78 | 1.10 | 0.71 | 0.84 | 2.12 | 7361 | 915 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 8Gi1 | 40059 | 2023-12-09 | 2023-03-13 | 3.65 | 3.39 | 3.63 | 3.8 | 0.017 | 1.44 | 12.0 | 0.10 | 11.69 | 0.01 | 1.301 | 10.30 | 0.86 | 4.1 | 95.9 | 0.0 | 1.00 | 0.61 | 0.69 | 2.76 | 3.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.82 | 0.00 | 2.120 | 7.63 | 0.38 | 5.9 | 94.1 | 0.0 | 2.23 | 2.10 | 0.67 | 0.78 | 2.42 | 9704 | 1152 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YP7 | 33995 | 2023-12-10 | 2022-08-02 | 3.1 | 3.27 | 3.27 | 3.2 | 0.007 | 0.95 | 0.0 | 0.06 | 15.19 | 0.01 | 1.823 | 5.31 | 1.44 | 7.7 | 91.7 | 0.6 | -4.81 | 0.78 | 0.83 | 3.48 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 16.29 | 0.00 | 2.088 | 8.00 | 0.12 | 6.0 | 93.8 | 0.2 | -0.95 | 1.26 | 0.82 | 0.86 | 3.03 | 7909 | 1007 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAF | 4773 | 2023-12-09 | 2019-04-06 | 3.8 | 3.97 | 3.89 | 3.9 | 0.008 | 1.58 | 5.0 | 0.09 | 13.65 | 0.01 | 2.258 | 6.07 | 0.10 | 3.5 | 96.2 | 0.3 | -0.14 | 0.74 | 0.76 | 1.75 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.31 | 0.00 | 2.002 | 8.89 | 0.38 | 2.7 | 97.3 | 0.0 | 1.69 | 0.73 | 0.78 | 0.79 | 1.36 | 10174 | 1280 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 8EQT | 28545 | 2023-12-07 | 2022-10-09 | 3.4 | 3.89 | 3.34 | 3.7 | 0.006 | 0.89 | 0.0 | 0.05 | 17.01 | 0.00 | 2.213 | 11.78 | 0.00 | 2.1 | 97.9 | 0.0 | 0.61 | 0.62 | 0.82 | 3.25 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 18.74 | 0.00 | 2.252 | 11.47 | 0.29 | 3.7 | 96.3 | 0.0 | 1.08 | 0.82 | 0.66 | 0.87 | 2.90 | 3206 | 382 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 5N8Y | 3602 | 2023-12-13 | 2017-02-24 | 4.7 | 4.76 | — | 4.7 | 0.017 | 2.39 | 6.0 | 0.08 | 7.59 | 0.01 | 0.788 | 16.57 | 0.00 | 4.2 | 94.4 | 1.4 | -1.65 | 0.65 | 0.64 | — | 4.7 | 0.003 | 0.79 | 0.0 | 0.04 | 5.73 | 0.00 | 2.234 | 3.43 | 0.00 | 9.5 | 90.4 | 0.0 | -1.95 | 3.82 | 0.74 | 0.79 | — | 23514 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NiL | 9380 | 2023-12-10 | 2018-12-29 | 3.9 | 4.02 | — | 3.9 | 0.005 | 0.96 | 16.0 | 0.08 | 13.20 | 0.02 | 2.396 | 3.53 | 0.99 | 9.6 | 90.4 | 0.0 | -4.92 | 0.83 | 0.84 | 1.98 | 3.9 | 0.006 | 0.86 | 0.0 | 0.05 | 16.02 | 0.00 | 1.955 | 19.73 | 0.62 | 9.5 | 90.5 | 0.0 | -2.43 | 2.73 | 0.83 | 0.81 | 1.58 | 15220 | 1800 | 16 | 0 | 4 | 0 | 0 | logfile |
✔ | 5X0Y | 6700 | 2023-12-11 | 2017-01-23 | 4.69 | 4.70 | — | 4.5 | 0.012 | 1.12 | 0.0 | 0.05 | 26.09 | 0.01 | 1.932 | 49.72 | 0.26 | 10.8 | 88.7 | 0.5 | -5.59 | 0.86 | 0.75 | — | 4.5 | 0.004 | 0.72 | 0.0 | 0.04 | 25.52 | 0.00 | 1.982 | 20.33 | 0.00 | 5.7 | 94.2 | 0.2 | -0.03 | 0.93 | 0.89 | 0.82 | — | 16798 | 1349 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 6MUT | 9255 | 2023-12-11 | 2018-10-23 | 3.1 | 3.24 | — | 3.2 | 0.013 | 1.29 | 2.0 | 0.08 | 14.10 | 0.01 | 1.830 | 14.71 | 1.23 | 7.5 | 92.3 | 0.2 | -4.80 | 0.71 | 0.75 | 3.50 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 16.09 | 0.00 | 2.086 | 8.99 | 0.25 | 5.3 | 94.6 | 0.0 | -1.20 | 0.77 | 0.74 | 0.83 | 2.80 | 17151 | 2115 | 11 | 39 | 3 | 0 | 0 | logfile |
✔ | 8EQJ | 28538 | 2023-12-07 | 2022-10-07 | 3.0 | 3.22 | 2.93 | 3.2 | 0.005 | 0.94 | 0.0 | 0.04 | 24.65 | 0.01 | 2.219 | 9.35 | 0.00 | 2.7 | 97.3 | 0.0 | -0.19 | 0.47 | 0.74 | 2.78 | 3.2 | 0.004 | 0.55 | 0.0 | 0.04 | 18.48 | 0.00 | 2.223 | 8.41 | 1.15 | 1.1 | 98.9 | 0.0 | 1.27 | 1.17 | 0.60 | 0.87 | 3.27 | 3232 | 384 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LMW | 0922 | 2023-12-09 | 2019-12-26 | 3.4 | 3.55 | 3.21 | 3.5 | 0.007 | 0.91 | 0.0 | 0.05 | 15.33 | 0.01 | 2.292 | 2.21 | 0.63 | 1.6 | 98.4 | 0.0 | -5.34 | 0.53 | 0.73 | 3.03 | 3.5 | 0.002 | 0.63 | 0.0 | 0.04 | 16.35 | 0.00 | 2.228 | 5.83 | 1.18 | 1.1 | 98.9 | 0.0 | 2.21 | 0.44 | 0.66 | 0.83 | 2.32 | 11624 | 1472 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QNE | 14076 | 2023-12-10 | 2021-12-20 | 2.7 | 2.57 | — | 2.7 | 0.004 | 0.60 | 0.0 | 0.04 | 9.35 | 0.00 | 2.237 | 4.99 | 0.25 | 1.6 | 98.4 | 0.0 | 0.58 | 0.73 | 0.88 | 5.41 | 2.7 | 0.004 | 0.57 | 0.0 | 0.04 | 14.81 | 0.00 | 2.143 | 7.08 | 1.55 | 2.0 | 98.0 | 0.0 | 1.13 | 1.05 | 0.75 | 0.90 | 4.85 | 15302 | 1808 | 17 | 0 | 42 | 0 | 0 | logfile |
✔ | 6WUL | 21915 | 2023-12-11 | 2020-05-04 | 3.2 | 3.39 | — | 3.3 | 0.005 | 0.83 | 0.0 | 0.05 | 15.56 | 0.01 | 2.101 | 8.19 | 7.00 | 12.7 | 87.2 | 0.1 | -3.87 | 0.69 | 0.80 | 2.35 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 15.52 | 0.00 | 2.135 | 7.06 | 0.30 | 9.9 | 90.1 | 0.0 | -1.17 | 0.49 | 0.66 | 0.79 | 2.38 | 16386 | 2168 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTJ | 24682 | 2023-12-11 | 2021-08-13 | 3.8 | 3.82 | — | 3.8 | 0.008 | 1.02 | 0.0 | 0.05 | 20.09 | 0.01 | 2.224 | 9.50 | 1.17 | 5.6 | 94.4 | 0.0 | 0.00 | 0.65 | 0.75 | 1.48 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 17.74 | 0.00 | 2.213 | 11.90 | 0.29 | 4.8 | 95.2 | 0.0 | 0.87 | 1.51 | 0.63 | 0.76 | 1.34 | 13352 | 1592 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 6UC2 | 20725 | 2023-12-14 | 2019-09-13 | 4.48 | 5.01 | 4.26 | 4.8 | 0.016 | 1.93 | 0.0 | 0.08 | 20.47 | 0.01 | 2.208 | 11.97 | 14.82 | 7.6 | 92.4 | 0.0 | -4.41 | 0.61 | 0.76 | — | 4.8 | 0.004 | 0.93 | 0.0 | 0.05 | 16.18 | 0.00 | 2.049 | 28.67 | 0.00 | 7.8 | 92.2 | 0.0 | -2.88 | 0.85 | 0.62 | 0.76 | — | 28408 | 3624 | 16 | 0 | 24 | 0 | 0 | logfile |
✔ | 7NS3 | 12559 | 2023-12-10 | 2021-03-05 | 3.5 | 3.47 | 3.37 | 3.4 | 0.004 | 0.58 | 0.0 | 0.04 | 14.32 | 0.00 | 2.079 | 6.57 | 0.00 | 6.4 | 93.6 | 0.0 | 0.19 | 0.83 | 0.86 | 2.56 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 15.43 | 0.00 | 2.175 | 4.96 | 0.00 | 4.8 | 95.1 | 0.1 | 0.91 | 0.22 | 0.83 | 0.86 | 2.04 | 14445 | 1849 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QDo | 13922 | 2023-12-07 | 2021-11-27 | 3.6 | 3.83 | 3.30 | 3.7 | 0.005 | 0.82 | 0.0 | 0.05 | 11.62 | 0.00 | 2.223 | 7.51 | 0.00 | 10.0 | 90.0 | 0.0 | -0.82 | 0.71 | 0.74 | 3.77 | 3.7 | 0.004 | 0.76 | 0.0 | 0.05 | 15.66 | 0.00 | 2.171 | 15.02 | 2.12 | 9.0 | 91.0 | 0.0 | -0.62 | 0.71 | 0.70 | 0.75 | 3.03 | 3304 | 424 | 2 | 0 | 0 | 0 | 0 | logfile |