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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8G3L | 29701 | 2023-12-10 | 2023-02-08 | 3.5 | 3.60 | 3.55 | 3.6 | 0.006 | 0.81 | 0.0 | 0.05 | 16.63 | 0.01 | 2.191 | 7.84 | 0.00 | 5.5 | 94.5 | 0.0 | -0.13 | 0.66 | 0.73 | 2.04 | 3.6 | 0.002 | 0.59 | 0.0 | 0.04 | 17.23 | 0.00 | 2.197 | 6.68 | 0.19 | 4.4 | 95.6 | 0.0 | 0.60 | 0.40 | 0.65 | 0.71 | 1.36 | 14442 | 1791 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 7W4C | 32300 | 2023-12-11 | 2021-11-27 | 2.7 | 2.83 | — | 2.8 | 0.007 | 0.82 | 0.0 | 0.04 | 19.21 | 0.01 | 2.188 | 7.03 | 1.33 | 3.4 | 96.5 | 0.1 | 0.86 | 0.80 | 0.89 | 3.32 | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 17.95 | 0.00 | 2.147 | 6.77 | 1.85 | 3.4 | 96.6 | 0.0 | 1.25 | 0.27 | 0.78 | 0.88 | 3.11 | 68216 | 8270 | 69 | 0 | 47 | 0 | 0 | logfile |
✔ | 6GB2 | 4370 | 2023-12-08 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 20.43 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 20.25 | 0.00 | 1.939 | 10.58 | 0.24 | 3.5 | 96.5 | 0.1 | 0.83 | 0.76 | 0.84 | 0.88 | 2.20 | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✔ | 7WD9 | 32435 | 2023-12-11 | 2021-12-21 | 3.7 | 4.02 | — | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 7.35 | 0.00 | 1.967 | 2.78 | 0.00 | 4.2 | 95.6 | 0.1 | -1.79 | 0.57 | 0.42 | 0.74 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 13.60 | 0.00 | 1.783 | 12.89 | 0.25 | 6.5 | 93.4 | 0.1 | -1.03 | 1.34 | 0.75 | 0.69 | 0.98 | 69720 | 4533 | 9 | 0 | 0 | 0 | 34404 | logfile |
✔ | 7Q4W | 13819 | 2023-12-11 | 2021-11-02 | 3.78 | 5.84 | — | 4.5 | 0.005 | 0.84 | 0.0 | 0.05 | 13.85 | 0.01 | 2.186 | 8.26 | 0.52 | 3.1 | 96.8 | 0.0 | -0.36 | 0.83 | 0.65 | -0.36 | 4.5 | 0.004 | 0.73 | 0.0 | 0.05 | 15.20 | 0.00 | 2.119 | 22.47 | 0.67 | 4.1 | 95.9 | 0.0 | -0.03 | 0.63 | 0.92 | 0.84 | 0.36 | 18050 | 2364 | 12 | 0 | 22 | 0 | 0 | logfile |
✔ | 8ooU | 17031 | 2023-12-09 | 2023-04-06 | 2.9 | 3.00 | 2.93 | 2.9 | 0.021 | 1.03 | 0.0 | 0.04 | 14.49 | 0.00 | 2.203 | 9.12 | 0.00 | 2.4 | 97.6 | 0.0 | 0.71 | 0.80 | 0.85 | 3.26 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 16.53 | 0.00 | 2.195 | 9.00 | 1.28 | 1.7 | 98.3 | 0.0 | 1.52 | 0.37 | 0.82 | 0.87 | 2.88 | 61800 | 7560 | 22 | 140 | 0 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2023-12-09 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 15.44 | 0.00 | 2.167 | 14.27 | 0.30 | 3.8 | 96.2 | 0.0 | 1.16 | 1.16 | 0.72 | 0.84 | 0.30 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N9X | 0382 | 2023-12-12 | 2018-12-04 | 4.1 | 4.18 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 13.83 | 0.02 | 2.131 | 3.65 | 0.60 | 3.9 | 96.1 | 0.0 | -4.04 | 0.74 | 0.78 | — | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 14.66 | 0.00 | 1.916 | 7.57 | 0.10 | 3.8 | 96.2 | 0.0 | -0.67 | 1.30 | 0.77 | 0.80 | — | 19658 | 2419 | 14 | 31 | 12 | 0 | 0 | logfile |
✔ | 6K41 | 9911 | 2023-12-08 | 2019-05-23 | 2.9 | 2.88 | — | 2.9 | 0.009 | 1.07 | 0.0 | 0.06 | 10.21 | 0.01 | 2.166 | 3.99 | 0.44 | 5.1 | 94.9 | 0.0 | -2.62 | 0.73 | 0.85 | 4.09 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.21 | 0.00 | 2.047 | 6.20 | 3.18 | 4.1 | 95.9 | 0.0 | 0.52 | 0.67 | 0.75 | 0.84 | 3.34 | 8430 | 1077 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DL8 | 27499 | 2023-12-08 | 2022-07-07 | 3.0 | 4.08 | 3.15 | 3.6 | 0.003 | 0.53 | 0.0 | 0.04 | 16.82 | 0.01 | 1.612 | 6.82 | 3.54 | 2.5 | 97.3 | 0.1 | 2.02 | 0.75 | 0.82 | 1.99 | 3.7 | 0.004 | 0.79 | 0.0 | 0.04 | 16.83 | 0.00 | 1.980 | 11.36 | 4.96 | 3.3 | 96.5 | 0.1 | 2.41 | 0.54 | 0.73 | 0.83 | 2.29 | 6208 | 877 | 5 | 0 | 2 | 1 | 0 | logfile |
✔ | 6SB3 | 10134 | 2023-12-13 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 13.00 | 0.00 | 2.104 | 13.24 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.6 | 0.004 | 0.69 | 0.0 | 0.05 | 15.94 | 0.01 | 2.016 | 18.28 | 0.81 | 6.9 | 93.1 | 0.0 | -1.68 | 1.25 | 0.71 | 0.76 | 0.95 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 7So9 | 25263 | 2023-12-16 | 2021-10-29 | 2.4 | 2.43 | 2.40 | 2.4 | 0.010 | 1.19 | 0.0 | 0.07 | 10.53 | 0.01 | 2.154 | 0.79 | 0.17 | 1.5 | 98.5 | 0.0 | 0.67 | 0.74 | 0.78 | 4.76 | 2.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.24 | 0.00 | 1.970 | 4.58 | 1.69 | 1.8 | 98.2 | 0.0 | 1.04 | 1.01 | 0.73 | 0.77 | 4.69 | 34470 | 4434 | 24 | 0 | 51 | 354 | 0 | logfile |
✔ | 6GYB | 0089 | 2023-12-08 | 2018-06-28 | 3.28 | 3.42 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.06 | 9.51 | 0.01 | 2.304 | 4.03 | 0.22 | 6.6 | 93.4 | 0.0 | -4.49 | 0.81 | 0.87 | 4.60 | 3.4 | 0.005 | 0.65 | 0.0 | 0.05 | 14.20 | 0.00 | 2.142 | 7.18 | 0.40 | 6.3 | 93.7 | 0.0 | -1.08 | 0.55 | 0.81 | 0.89 | 3.74 | 59318 | 7546 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2023-12-08 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.65 | 0.0 | 0.16 | 17.58 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 18.03 | 0.00 | 2.173 | 9.80 | 0.25 | 7.5 | 92.4 | 0.1 | -1.84 | 2.13 | 0.67 | 0.83 | 1.22 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 7TBZ | 25802 | 2023-12-10 | 2021-12-22 | 4.3 | 4.56 | 4.01 | 4.0 | 0.002 | 0.56 | 0.0 | 0.04 | 13.06 | 0.00 | 2.207 | 6.66 | 0.00 | 3.8 | 96.2 | 0.1 | -2.61 | 0.70 | 0.77 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 12.11 | 0.00 | 2.180 | 10.69 | 0.00 | 6.3 | 93.7 | 0.0 | 0.20 | 2.67 | 0.72 | 0.82 | — | 13275 | 1788 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 7WEF | 32449 | 2023-12-07 | 2021-12-23 | 3.8 | 3.60 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 12.72 | 0.00 | 2.239 | 8.92 | 0.00 | 7.5 | 92.5 | 0.0 | -1.27 | 0.53 | 0.76 | 2.61 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 14.51 | 0.00 | 2.184 | 7.54 | 0.56 | 5.4 | 94.6 | 0.0 | -1.12 | 0.37 | 0.55 | 0.76 | 2.05 | 3328 | 432 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V3B | 21032 | 2023-12-15 | 2019-11-25 | 2.91 | 3.09 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 21.76 | 0.01 | 1.895 | 5.92 | 0.05 | 2.9 | 97.1 | 0.1 | -1.21 | 0.83 | 0.83 | 2.56 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 22.08 | 0.01 | 1.753 | 6.55 | 2.80 | 4.4 | 95.5 | 0.1 | 0.03 | 1.57 | 0.85 | 0.89 | 2.52 | 140290 | 5457 | 76 | 4535 | 95 | 398 | 0 | logfile |
✔ | 7W99 | 32362 | 2023-12-15 | 2021-12-09 | 3.4 | 3.65 | — | 3.6 | 0.004 | 0.59 | 0.0 | 0.04 | 12.55 | 0.00 | 2.076 | 1.67 | 0.12 | 3.1 | 96.9 | 0.0 | -3.42 | 0.65 | 0.69 | 1.63 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 16.16 | 0.00 | 2.105 | 10.74 | 0.39 | 3.4 | 96.6 | 0.0 | -0.49 | 1.03 | 0.68 | 0.74 | 1.58 | 29737 | 3777 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U2K | 20621 | 2023-12-07 | 2019-08-20 | 2.93 | 3.31 | 3.29 | 3.3 | 0.010 | 0.99 | 0.0 | 0.06 | 10.37 | 0.01 | 2.354 | 3.34 | 0.19 | 9.7 | 90.3 | 0.0 | -4.70 | 0.70 | 0.83 | 4.65 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.09 | 0.00 | 2.227 | 6.57 | 2.51 | 7.9 | 92.1 | 0.0 | -1.90 | 1.20 | 0.64 | 0.80 | 2.83 | 4719 | 604 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7W9B | 32363 | 2023-12-15 | 2021-12-09 | 3.4 | 3.64 | — | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 12.34 | 0.00 | 2.057 | 1.77 | 0.03 | 2.8 | 97.2 | 0.0 | -3.40 | 0.66 | 0.69 | 1.74 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 16.11 | 0.00 | 2.132 | 10.91 | 0.18 | 3.8 | 96.2 | 0.0 | -0.30 | 1.48 | 0.68 | 0.75 | 1.61 | 29737 | 3777 | 4 | 0 | 0 | 0 | 0 | logfile |