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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MN5 | 23916 | 2023-12-09 | 2021-04-30 | 2.93 | 3.53 | 3.04 | 3.3 | 0.013 | 1.46 | 0.0 | 0.08 | 10.99 | 0.01 | 2.311 | 0.48 | 0.00 | 3.3 | 96.7 | 0.0 | -0.05 | 0.82 | 0.81 | 3.67 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 13.38 | 0.00 | 2.229 | 4.68 | 1.71 | 4.3 | 95.7 | 0.0 | -0.35 | 1.39 | 0.81 | 0.84 | 3.46 | 9526 | 1213 | 8 | 0 | 13 | 0 | 0 | logfile |
✔ | 8SB1 | 40287 | 2023-12-12 | 2023-04-02 | 4.3 | 4.23 | 4.16 | 4.2 | 0.007 | 1.00 | 0.0 | 0.05 | 13.91 | 0.01 | 2.035 | 3.18 | 0.00 | 7.1 | 92.7 | 0.2 | -2.33 | 0.70 | 0.76 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.04 | 13.94 | 0.00 | 2.180 | 11.41 | 0.00 | 6.3 | 93.3 | 0.4 | -1.74 | 0.54 | 0.69 | 0.75 | — | 19979 | 2466 | 24 | 0 | 67 | 0 | 0 | logfile |
✔ | 7L8A | 23227 | 2023-12-10 | 2020-12-31 | 3.3 | 3.46 | 3.34 | 3.4 | 0.023 | 1.69 | 1.0 | 0.15 | 9.34 | 0.01 | 2.195 | 1.36 | 0.00 | 1.8 | 98.2 | 0.0 | 0.68 | 0.74 | 0.86 | 4.33 | 3.4 | 0.004 | 0.60 | 0.0 | 0.04 | 12.91 | 0.00 | 2.183 | 5.50 | 0.40 | 2.9 | 97.1 | 0.0 | -0.21 | 1.59 | 0.72 | 0.87 | 3.47 | 15728 | 1687 | 47 | 0 | 317 | 0 | 0 | logfile |
✔ | 6VTK | 21380 | 2023-12-09 | 2020-02-12 | 2.82 | 3.35 | — | 3.3 | 0.005 | 0.82 | 0.0 | 0.05 | 9.13 | 0.01 | 2.287 | 3.10 | 0.00 | 3.2 | 96.8 | 0.0 | -4.44 | 0.71 | 0.81 | 4.37 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 13.85 | 0.00 | 2.104 | 6.30 | 1.23 | 1.8 | 98.2 | 0.0 | -0.29 | 1.19 | 0.70 | 0.83 | 3.83 | 10686 | 1338 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6JCZ | 9800 | 2023-12-09 | 2019-01-30 | 3.35 | 4.22 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.04 | 15.49 | 0.00 | 1.670 | 3.80 | 0.00 | 6.8 | 93.2 | 0.0 | -5.41 | 0.85 | 0.74 | 2.43 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.55 | 0.00 | 1.842 | 9.23 | 0.12 | 5.6 | 94.4 | 0.0 | -2.47 | 2.63 | 0.86 | 0.84 | 2.57 | 63476 | 3959 | 36 | 0 | 48 | 99 | 31525 | logfile |
✔ | 7FGF | 31579 | 2023-12-09 | 2021-07-26 | 2.8 | 2.93 | — | 3.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.36 | 0.01 | 2.295 | 8.04 | 0.00 | 6.9 | 93.1 | 0.0 | -1.60 | 0.68 | 0.86 | 4.69 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 17.26 | 0.00 | 2.206 | 9.19 | 1.36 | 6.0 | 94.0 | 0.0 | -1.14 | 0.41 | 0.71 | 0.87 | 4.04 | 10143 | 1296 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UCB | 20727 | 2023-12-16 | 2019-09-15 | 3.28 | 3.46 | — | 3.5 | 0.009 | 0.76 | 0.0 | 0.05 | 14.69 | 0.01 | 2.152 | 5.74 | 0.00 | 5.1 | 94.9 | 0.0 | -3.14 | 0.64 | 0.76 | 2.69 | 3.4 | 0.003 | 0.48 | 0.0 | 0.04 | 14.51 | 0.00 | 2.133 | 9.93 | 0.36 | 3.8 | 96.2 | 0.0 | 0.65 | 0.92 | 0.66 | 0.81 | 2.56 | 32324 | 2044 | 16 | 0 | 30 | 0 | 15694 | logfile |
✔ | 6U5S | 20654 | 2023-12-15 | 2019-08-28 | 3.07 | 3.44 | — | 3.4 | 0.004 | 0.49 | 0.0 | 0.08 | 13.57 | 0.00 | 2.078 | 6.02 | 0.00 | 3.3 | 96.7 | 0.0 | -3.21 | 0.81 | 0.80 | 4.41 | 3.3 | 0.004 | 0.50 | 0.0 | 0.04 | 13.07 | 0.00 | 2.099 | 7.20 | 0.00 | 3.2 | 96.8 | 0.0 | -0.06 | 1.24 | 0.83 | 0.83 | 4.25 | 21461 | 1504 | 12 | 0 | 20 | 0 | 9755 | logfile |
✔ | 7YKS | 33896 | 2023-12-11 | 2022-07-23 | 3.0 | 3.20 | 3.06 | 4.7 | 0.008 | 1.00 | 0.0 | 0.06 | 10.27 | 0.01 | 2.291 | 4.01 | 0.00 | 6.7 | 93.1 | 0.2 | -6.58 | 0.17 | 0.11 | -0.18 | 3.2 | 0.003 | 0.77 | 0.0 | 0.04 | 16.58 | 0.00 | 2.059 | 8.61 | 1.28 | 4.7 | 95.3 | 0.0 | -0.45 | 2.19 | 0.59 | 0.80 | 1.54 | 18984 | 2364 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AF8 | 11756 | 2023-12-11 | 2020-09-19 | 2.75 | 3.17 | 2.81 | 2.9 | 0.006 | 0.63 | 4.0 | 0.04 | 20.36 | 0.02 | 2.002 | 6.53 | 0.00 | 3.6 | 96.4 | 0.0 | -0.93 | 0.84 | 0.87 | 2.54 | 2.9 | 0.005 | 0.71 | 0.0 | 0.04 | 20.88 | 0.01 | 1.897 | 10.61 | 4.02 | 4.9 | 95.0 | 0.1 | 0.82 | 0.52 | 0.86 | 0.90 | 2.38 | 18565 | 1109 | 11 | 456 | 52 | 0 | 0 | logfile |
✔ | 7UVL | 26813 | 2023-12-11 | 2022-05-02 | 3.56 | 4.29 | 3.57 | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 12.92 | 0.00 | 2.161 | 13.72 | 0.00 | 5.2 | 94.8 | 0.0 | -0.68 | 0.90 | 0.82 | 1.57 | 3.8 | 0.005 | 0.67 | 0.0 | 0.04 | 14.80 | 0.00 | 2.044 | 18.46 | 0.22 | 7.1 | 92.9 | 0.0 | -0.75 | 0.88 | 0.90 | 0.83 | 1.07 | 16508 | 2154 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BoK | 30131 | 2023-12-14 | 2020-03-19 | 3.7 | 3.80 | 3.93 | 3.7 | 0.009 | 0.92 | 0.0 | 0.05 | 14.40 | 0.01 | 2.036 | 8.66 | 0.00 | 4.6 | 95.4 | 0.0 | -3.42 | 0.78 | 0.82 | 2.36 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 15.87 | 0.00 | 2.163 | 14.82 | 0.42 | 4.8 | 95.2 | 0.0 | -0.37 | 1.27 | 0.79 | 0.84 | 2.14 | 29112 | 3708 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 7L8U | 23237 | 2023-12-10 | 2021-01-01 | 4.5 | 4.63 | 4.35 | 4.5 | 0.021 | 1.77 | 2.0 | 0.14 | 10.49 | 0.02 | 2.199 | 2.59 | 0.00 | 2.9 | 97.1 | 0.0 | 0.24 | 0.73 | 0.78 | — | 4.5 | 0.003 | 0.74 | 0.0 | 0.05 | 12.20 | 0.00 | 2.024 | 13.02 | 0.00 | 4.0 | 96.0 | 0.0 | -0.84 | 0.99 | 0.73 | 0.81 | — | 15475 | 1675 | 25 | 0 | 300 | 0 | 0 | logfile |
✔ | 7CN0 | 30412 | 2023-12-08 | 2020-07-29 | 3.9 | 3.96 | — | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 13.32 | 0.00 | 1.843 | 14.90 | 0.00 | 8.1 | 91.9 | 0.0 | -2.90 | 0.55 | 0.77 | 2.36 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.71 | 0.00 | 2.242 | 11.10 | 0.00 | 7.3 | 92.7 | 0.0 | 0.18 | 0.59 | 0.55 | 0.77 | 1.69 | 6602 | 884 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 7L87 | 23224 | 2023-12-10 | 2020-12-31 | 3.6 | 3.72 | 3.54 | 3.7 | 0.023 | 1.76 | 2.0 | 0.15 | 9.55 | 0.02 | 2.027 | 2.02 | 0.00 | 2.4 | 97.6 | 0.0 | 0.74 | 0.70 | 0.82 | 3.36 | 3.7 | 0.005 | 0.72 | 0.0 | 0.05 | 13.71 | 0.00 | 2.165 | 7.91 | 0.87 | 4.6 | 95.4 | 0.0 | -0.20 | 1.26 | 0.70 | 0.82 | 2.81 | 15766 | 1677 | 53 | 0 | 326 | 0 | 0 | logfile |
✔ | 8HMV | 34903 | 2023-12-08 | 2022-12-05 | 2.91 | 3.27 | 3.06 | 3.2 | 0.005 | 0.63 | 0.0 | 0.04 | 13.38 | 0.00 | 2.150 | 4.96 | 0.00 | 3.3 | 96.7 | 0.0 | -0.72 | 0.67 | 0.86 | 4.20 | 3.2 | 0.003 | 0.49 | 0.0 | 0.04 | 15.50 | 0.00 | 2.170 | 4.71 | 0.45 | 2.6 | 97.4 | 0.0 | 0.81 | 0.37 | 0.66 | 0.87 | 3.21 | 8127 | 1022 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oLA | 12975 | 2023-12-12 | 2021-05-19 | 3.3 | 3.85 | 3.21 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 16.47 | 0.00 | 2.023 | 7.61 | 0.00 | 2.7 | 97.3 | 0.0 | 1.22 | 0.88 | 0.85 | 2.96 | 3.3 | 0.003 | 0.49 | 0.0 | 0.04 | 16.03 | 0.00 | 1.929 | 8.35 | 0.09 | 2.9 | 97.1 | 0.0 | 1.14 | 0.88 | 0.88 | 0.89 | 2.94 | 19719 | 2394 | 10 | 0 | 7 | 0 | 0 | logfile |
✔ | 8PM2 | 17756 | 2023-12-08 | 2023-06-28 | 2.92 | 2.98 | 2.94 | 3.3 | 0.006 | 0.78 | 0.0 | 0.05 | 13.03 | 0.01 | 2.132 | 4.04 | 0.00 | 2.4 | 97.6 | 0.0 | 0.56 | 0.74 | 0.80 | 3.49 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.96 | 0.00 | 2.102 | 8.27 | 2.87 | 2.3 | 97.7 | 0.0 | 1.47 | 0.54 | 0.74 | 0.84 | 3.07 | 7821 | 1009 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TRQ | 26101 | 2023-12-08 | 2022-01-30 | 2.5 | 3.10 | 2.20 | 2.8 | 0.006 | 0.83 | 0.0 | 0.06 | 11.80 | 0.01 | 2.295 | 2.26 | 0.00 | 2.0 | 98.0 | 0.0 | -0.50 | 0.75 | 0.89 | 4.72 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.53 | 0.00 | 2.204 | 6.04 | 0.86 | 1.7 | 98.3 | 0.0 | 1.20 | 0.98 | 0.76 | 0.91 | 4.39 | 8723 | 1129 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8Go8 | 34173 | 2023-12-09 | 2022-08-24 | 3.41 | 3.65 | 3.44 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 12.95 | 0.00 | 2.253 | 5.19 | 0.00 | 2.7 | 97.3 | 0.0 | 1.03 | 0.74 | 0.81 | 2.28 | 3.7 | 0.004 | 0.58 | 0.0 | 0.04 | 14.79 | 0.00 | 2.156 | 7.55 | 0.25 | 3.9 | 96.1 | 0.0 | 0.63 | 0.62 | 0.76 | 0.84 | 2.72 | 11505 | 1520 | 8 | 0 | 0 | 0 | 0 | logfile |