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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YoX | 33989 | 2023-12-10 | 2022-08-02 | 3.95 | 4.33 | 4.09 | 4.1 | 0.006 | 1.31 | 8.0 | 0.10 | 27.06 | 0.01 | 0.786 | 33.58 | 46.70 | 1.0 | 98.8 | 0.2 | 2.84 | 0.82 | 0.70 | 0.48 | 4.1 | 0.003 | 0.80 | 0.0 | 0.05 | 18.73 | 0.00 | 2.122 | 24.63 | 0.44 | 2.8 | 97.2 | 0.0 | 0.19 | 1.10 | 0.84 | 0.77 | 0.35 | 13878 | 1749 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2023-12-07 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.6 | 0.003 | 0.67 | 0.0 | 0.03 | 18.96 | 0.00 | 1.968 | 10.05 | 0.00 | 6.2 | 93.8 | 0.0 | 2.46 | 2.56 | 0.02 | 0.06 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 8GRS | 34214 | 2023-12-07 | 2022-09-02 | 3.3 | 3.91 | 3.48 | 3.8 | 0.016 | 1.94 | 6.0 | 0.13 | 26.31 | 0.02 | 1.285 | 16.08 | 44.03 | 21.3 | 72.9 | 5.8 | -5.46 | 0.61 | 0.72 | 1.86 | 3.8 | 0.004 | 0.88 | 0.0 | 0.04 | 18.74 | 0.01 | 2.181 | 16.46 | 1.25 | 12.7 | 87.0 | 0.3 | -1.30 | 1.98 | 0.46 | 0.77 | 1.77 | 5148 | 626 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8GSo | 34237 | 2023-12-09 | 2022-09-06 | 3.3 | 3.69 | 3.38 | 3.7 | 0.013 | 1.66 | 18.0 | 0.11 | 25.12 | 0.01 | 1.194 | 20.44 | 41.49 | 17.0 | 76.3 | 6.7 | -5.21 | 0.57 | 0.72 | 1.47 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 17.77 | 0.01 | 2.129 | 13.25 | 0.52 | 12.7 | 86.8 | 0.5 | -0.35 | 1.07 | 0.55 | 0.83 | 1.88 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GRo | 34210 | 2023-12-09 | 2022-09-02 | 3.5 | 3.98 | 3.66 | 3.9 | 0.013 | 1.67 | 17.0 | 0.11 | 25.25 | 0.01 | 1.194 | 18.95 | 41.49 | 16.3 | 77.1 | 6.6 | -5.21 | 0.60 | 0.74 | 1.94 | 3.9 | 0.004 | 0.86 | 0.0 | 0.04 | 18.60 | 0.01 | 2.139 | 18.39 | 0.95 | 12.3 | 87.5 | 0.2 | -0.77 | 1.31 | 0.57 | 0.81 | 1.64 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 4Ci0 | 2513 | 2023-12-14 | 2013-12-05 | 3.36 | 3.43 | — | 3.4 | 0.014 | 1.93 | 24.0 | 1.74 | 23.87 | 0.03 | 1.915 | 119.42 | 39.11 | 3.4 | 96.5 | 0.1 | 1.78 | 0.71 | 0.70 | 0.31 | 3.4 | 0.014 | 2.74 | 0.0 | 0.54 | 18.70 | 0.00 | 2.126 | 19.49 | 0.74 | 4.2 | 95.8 | 0.0 | -0.41 | 2.13 | 0.82 | 0.86 | 1.35 | 83472 | 10716 | 72 | 0 | 108 | 0 | 0 | logfile |
✔ | 8GRN | 34209 | 2023-12-09 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.95 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 19.31 | 0.01 | 1.940 | 9.44 | 3.96 | 9.7 | 89.7 | 0.6 | -0.17 | 1.25 | 0.44 | 0.71 | 2.57 | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-12-07 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 13.91 | 0.00 | 2.223 | 14.60 | 0.00 | 8.3 | 91.5 | 0.2 | -2.31 | 3.59 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GZ7 | 34391 | 2023-12-11 | 2022-09-26 | 3.5 | 3.85 | 3.64 | 3.8 | 0.012 | 1.67 | 6.0 | 0.13 | 24.08 | 0.01 | 1.693 | 4.61 | 32.81 | 5.8 | 93.5 | 0.7 | -1.19 | 0.62 | 0.80 | 3.08 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 17.40 | 0.00 | 2.110 | 7.68 | 0.37 | 3.9 | 95.8 | 0.3 | -0.27 | 1.83 | 0.66 | 0.84 | 3.30 | 17474 | 2136 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2023-12-10 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.15 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J8J | 9782 | 2023-12-09 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.90 | 0.01 | 1.829 | 71.00 | 28.80 | 2.5 | 96.2 | 1.3 | 2.79 | 0.59 | 0.76 | 1.66 | 3.4 | 0.004 | 0.80 | 0.0 | 0.06 | 17.84 | 0.00 | 2.132 | 9.59 | 0.93 | 4.2 | 95.7 | 0.1 | 0.68 | 1.44 | 0.60 | 0.83 | 1.75 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8i | 9782 | 2023-12-09 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.89 | 0.01 | 1.829 | 71.34 | 28.73 | 2.5 | 96.2 | 1.3 | 2.78 | 0.59 | 0.76 | 1.66 | 3.4 | 0.005 | 0.82 | 0.0 | 0.07 | 17.86 | 0.00 | 2.121 | 10.31 | 1.16 | 4.3 | 95.5 | 0.2 | 0.48 | 1.43 | 0.59 | 0.82 | 1.86 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2023-12-12 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.96 | 4.0 | 0.04 | 9.37 | 0.00 | 2.173 | 6.74 | 0.32 | 9.5 | 88.8 | 1.7 | 0.19 | 0.81 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2023-12-11 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.88 | 0.0 | 0.04 | 13.21 | 0.00 | 2.219 | 17.86 | 0.00 | 6.4 | 93.2 | 0.4 | 0.16 | 1.78 | 0.67 | 0.52 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 3J5P | 5778 | 2023-12-11 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.53 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 79.06 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.4 | 0.004 | 0.91 | 0.0 | 0.04 | 16.97 | 0.00 | 2.085 | 17.32 | 0.41 | 5.3 | 94.6 | 0.1 | 0.51 | 2.09 | 0.74 | 0.79 | 0.11 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 8Jo0 | 36451 | 2023-12-14 | 2023-06-06 | 3.6 | 4.68 | 3.50 | 3.5 | 0.009 | 1.48 | 1.0 | 0.08 | 21.29 | 0.01 | 1.813 | 62.06 | 27.27 | 13.8 | 84.9 | 1.3 | -4.82 | 0.84 | 0.71 | 0.75 | 3.7 | 0.004 | 0.83 | 0.0 | 0.04 | 16.62 | 0.00 | 1.844 | 14.45 | 0.26 | 5.3 | 94.7 | 0.1 | -0.23 | 3.15 | 0.88 | 0.84 | 1.42 | 27362 | 3382 | 20 | 0 | 14 | 0 | 0 | logfile |
✔ | 6J8H | 9781 | 2023-12-09 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.72 | 0.01 | 1.886 | 58.60 | 27.17 | 2.0 | 96.6 | 1.3 | 2.87 | 0.60 | 0.78 | 1.53 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 18.11 | 0.00 | 2.186 | 7.65 | 0.31 | 3.7 | 96.1 | 0.3 | 0.70 | 0.80 | 0.60 | 0.84 | 1.81 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8G | 9781 | 2023-12-09 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.73 | 0.01 | 1.886 | 58.56 | 27.17 | 2.0 | 96.6 | 1.3 | 2.85 | 0.60 | 0.78 | 1.54 | 3.3 | 0.003 | 0.71 | 0.0 | 0.04 | 18.18 | 0.00 | 2.168 | 8.07 | 0.39 | 4.2 | 95.5 | 0.3 | 0.69 | 0.80 | 0.60 | 0.84 | 1.85 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7YRR | 34065 | 2023-12-13 | 2022-08-10 | 4.3 | 4.40 | 4.25 | 4.2 | 0.013 | 2.13 | 5.0 | 0.11 | 22.39 | 0.01 | 1.874 | 15.92 | 26.25 | 21.4 | 73.0 | 5.6 | -5.95 | 0.67 | 0.46 | — | 4.2 | 0.024 | 1.02 | 0.0 | 0.04 | 14.75 | 0.01 | 1.844 | 33.84 | 0.13 | 18.7 | 80.5 | 0.8 | -4.43 | 1.27 | 0.69 | 0.53 | — | 24937 | 1697 | 4 | 0 | 0 | 0 | 11408 | logfile |
✔ | 8HLZ | 34886 | 2023-12-13 | 2022-12-02 | 3.5 | 3.89 | 3.48 | 3.4 | 0.010 | 1.15 | 1.0 | 0.06 | 21.96 | 0.01 | 1.958 | 26.05 | 25.98 | 11.7 | 86.6 | 1.8 | -4.60 | 0.61 | 0.42 | 0.73 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 17.44 | 0.00 | 2.070 | 15.37 | 0.50 | 7.6 | 91.9 | 0.5 | -1.62 | 1.98 | 0.74 | 0.63 | 0.86 | 24718 | 3034 | 6 | 0 | 0 | 0 | 0 | logfile |