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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5X1G | 6701 | 2024-01-17 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2024-01-18 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-01-19 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2024-01-18 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2024-01-19 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.75 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2024-01-17 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2024-01-17 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W7F | 32343 | 2024-01-19 | 2021-12-04 | 3.35 | 3.74 | — | 3.7 | 0.015 | 1.03 | 0.0 | 0.07 | 18.83 | 0.01 | 2.144 | 13.75 | 0.31 | 8.1 | 91.6 | 0.3 | -1.42 | 0.42 | 0.74 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11987 | 1424 | 7 | 0 | 29 | 0 | 0 | logfile |
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7M3N | 23658 | 2024-01-17 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2024-01-18 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 7QJV | 14023 | 2024-01-20 | 2021-12-17 | 3.29 | 3.75 | 2.41 | 3.4 | 0.012 | 2.13 | 7.0 | 0.11 | 11.77 | 0.01 | 2.497 | 0.72 | 0.13 | 9.5 | 90.5 | 0.0 | -2.07 | 0.44 | 0.77 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✘ | 8CE7 | 16600 | 2024-01-19 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H86 | 34530 | 2024-01-18 | 2022-10-21 | 2.56 | 2.71 | 2.58 | 2.7 | 0.014 | 1.56 | 0.0 | 0.08 | 18.47 | 0.03 | 2.296 | 6.79 | 0.45 | 4.0 | 96.0 | 0.0 | -0.67 | 0.46 | 0.73 | 5.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7080 | 765 | 6 | 0 | 48 | 63 | 0 | logfile |
✘ | 5XJC | 6721 | 2024-01-19 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.69 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 7YDQ | 33756 | 2024-01-17 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.006 | 0.83 | 0.0 | 0.04 | 17.50 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7Si6 | 25138 | 2024-01-20 | 2021-10-12 | 3.32 | 3.28 | — | 3.3 | 0.003 | 1.22 | 0.0 | 0.04 | 13.58 | 0.00 | 2.044 | 4.51 | 0.00 | 1.4 | 98.6 | 0.0 | 2.88 | 0.46 | 0.77 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13515 | 873 | 1 | 0 | 2 | 0 | 6910 | logfile |
✘ | 7XF2 | 33168 | 2024-01-17 | 2022-03-31 | 3.73 | 4.88 | 3.77 | 3.9 | 0.004 | 0.65 | 0.0 | 0.04 | 14.12 | 0.00 | 2.133 | 14.17 | 0.13 | 8.5 | 91.5 | 0.0 | -4.97 | 0.46 | 0.78 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6591 | 840 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6E1P | 8960 | 2024-01-19 | 2018-07-10 | 3.7 | 3.93 | 3.55 | 3.9 | 0.010 | 1.30 | 1.0 | 0.06 | 14.00 | 0.01 | 1.571 | 10.25 | 0.18 | 6.9 | 92.9 | 0.2 | -5.32 | 0.47 | 0.68 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10697 | 1292 | 6 | 0 | 21 | 2 | 0 | logfile |
✘ | 7Si3 | 25137 | 2024-01-20 | 2021-10-12 | 3.19 | 3.21 | — | 3.2 | 0.003 | 1.19 | 0.0 | 0.04 | 13.00 | 0.00 | 2.038 | 2.15 | 0.00 | 1.5 | 98.5 | 0.0 | 3.72 | 0.48 | 0.77 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13500 | 873 | 1 | 0 | 2 | 0 | 6901 | logfile |