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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5X1G | 6701 | 2024-01-17 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2024-01-18 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 7U6V | 26381 | 2024-01-20 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✘ | 8AZS | 15770 | 2024-01-18 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2024-01-19 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.75 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2024-01-18 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |
✘ | 5ZWM | 6972 | 2024-01-18 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 14.46 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2024-01-18 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2024-01-18 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-01-19 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 8DUL | 27722 | 2024-01-20 | 2022-07-27 | 4.17 | 4.34 | 4.24 | 4.7 | 0.005 | 1.04 | 0.0 | 0.07 | 13.09 | 0.02 | 2.317 | 6.11 | 0.06 | 5.3 | 94.7 | 0.0 | -2.03 | 0.56 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14203 | 1802 | 15 | 0 | 10 | 0 | 0 | logfile |
✘ | 7WZ3 | 32903 | 2024-01-18 | 2022-02-16 | 4.1 | 3.52 | — | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 11.64 | 0.00 | 2.022 | 2.41 | 0.06 | 2.8 | 97.2 | 0.0 | -4.27 | 0.62 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58551 | 7652 | 22 | 0 | 6 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2024-01-19 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2024-01-19 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.69 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2024-01-18 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 8HoY | 34927 | 2024-01-20 | 2022-12-11 | 2.76 | 2.99 | 2.88 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 13.25 | 0.00 | 2.189 | 9.49 | 0.00 | 7.4 | 92.6 | 0.1 | -0.64 | 0.51 | 0.54 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13454 | 1650 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZGK | 11209 | 2024-01-19 | 2020-06-18 | 3.6 | 3.77 | 3.64 | 3.8 | 0.006 | 0.68 | 0.0 | 0.05 | 12.30 | 0.01 | 2.111 | 7.47 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.50 | 0.54 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11630 | 1535 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6i52 | 4410 | 2024-01-17 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✘ | 6N7S | 0362 | 2024-01-19 | 2018-11-28 | 4.6 | 4.47 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.07 | 14.87 | 0.01 | 1.812 | 8.33 | 1.04 | 12.5 | 87.5 | 0.0 | -5.07 | 0.69 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12783 | 1607 | 11 | 13 | 8 | 0 | 0 | logfile |
✘ | 8JVM | 36677 | 2024-01-17 | 2023-06-28 | 3.86 | 4.13 | 3.89 | 3.9 | 0.006 | 1.08 | 1.0 | 0.06 | 14.54 | 0.01 | 2.138 | 27.03 | 1.75 | 16.3 | 82.1 | 1.6 | -3.56 | 0.64 | 0.54 | 0.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3726 | 498 | 3 | 0 | 0 | 0 | 0 | logfile |