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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8oUW | 17204 | 2024-01-17 | 2023-04-25 | 3.75 | 3.90 | 3.25 | 3.5 | 0.006 | 0.91 | 0.0 | 0.05 | 14.71 | 0.01 | 2.008 | 0.19 | 0.38 | 2.0 | 98.0 | 0.0 | 0.31 | 0.81 | 0.65 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53754 | 6564 | 25 | 67 | 13 | 0 | 0 | logfile |
✘ | 8iV8 | 35746 | 2024-01-17 | 2023-03-26 | 3.92 | 4.11 | 3.90 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 15.13 | 0.01 | 2.272 | 5.07 | 0.74 | 6.1 | 93.9 | 0.0 | -3.56 | 0.58 | 0.71 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4944 | 630 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8HRN | 34979 | 2024-01-17 | 2022-12-15 | 3.9 | 4.18 | 3.98 | 4.0 | 0.005 | 0.91 | 0.0 | 0.05 | 17.07 | 0.01 | 2.080 | 24.49 | 0.95 | 3.4 | 96.6 | 0.0 | -1.15 | 0.76 | 0.69 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 597 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BL2 | 16100 | 2024-01-18 | 2022-11-09 | 2.3 | 2.29 | 2.26 | 2.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.84 | 0.00 | 1.872 | 11.53 | 1.01 | 1.2 | 98.8 | 0.0 | 0.70 | 0.76 | 0.75 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57128 | 7336 | 42 | 0 | 42 | 2780 | 0 | logfile |
✘ | 8CE7 | 16600 | 2024-01-19 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HXX | 0297 | 2024-01-20 | 2018-10-18 | 3.4 | 3.76 | 3.51 | 3.7 | 0.008 | 1.14 | 0.0 | 0.07 | 12.31 | 0.01 | 1.586 | 8.35 | 0.28 | 8.1 | 91.9 | 0.0 | -3.79 | 0.53 | 0.84 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65765 | 7840 | 70 | 175 | 0 | 0 | 0 | logfile |
✘ | 8BVR | 16269 | 2024-01-17 | 2022-12-05 | 3.52 | 4.00 | 3.61 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 17.01 | 0.01 | 2.178 | 12.22 | 0.19 | 4.6 | 95.4 | 0.0 | 0.64 | 0.62 | 0.78 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4806 | 617 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7QJV | 14023 | 2024-01-20 | 2021-12-17 | 3.29 | 3.75 | 2.41 | 3.4 | 0.012 | 2.13 | 7.0 | 0.11 | 11.77 | 0.01 | 2.497 | 0.72 | 0.13 | 9.5 | 90.5 | 0.0 | -2.07 | 0.44 | 0.77 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✘ | 8H86 | 34530 | 2024-01-18 | 2022-10-21 | 2.56 | 2.71 | 2.58 | 2.7 | 0.014 | 1.56 | 0.0 | 0.08 | 18.47 | 0.03 | 2.296 | 6.79 | 0.45 | 4.0 | 96.0 | 0.0 | -0.67 | 0.46 | 0.73 | 5.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7080 | 765 | 6 | 0 | 48 | 63 | 0 | logfile |
✘ | 6SAG | 10130 | 2024-01-17 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 5X1G | 6701 | 2024-01-17 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PP6 | 13580 | 2024-01-20 | 2021-09-13 | 3.4 | 4.07 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 12.33 | 0.00 | 1.846 | 6.09 | 0.19 | 9.2 | 90.8 | 0.0 | -2.04 | 0.77 | 0.76 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66562 | 4592 | 22 | 0 | 28 | 92 | 31702 | logfile |
✘ | 8AZT | 15771 | 2024-01-17 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2024-01-19 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JR9 | 36593 | 2024-01-18 | 2023-06-16 | 2.57 | 2.48 | 2.53 | 2.7 | 0.005 | 0.65 | 0.0 | 0.04 | 17.65 | 0.00 | 2.240 | 5.96 | 0.24 | 2.2 | 97.8 | 0.0 | 1.80 | 0.57 | 0.74 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7893 | 1014 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8H0Q | 34414 | 2024-01-18 | 2022-09-30 | 3.3 | 3.78 | 3.20 | 3.7 | 0.019 | 0.59 | 0.0 | 0.09 | 9.28 | 0.00 | 2.260 | 7.81 | 0.62 | 1.0 | 99.0 | 0.0 | -1.95 | 0.63 | 0.72 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8949 | 1134 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-01-18 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8JVH | 36674 | 2024-01-18 | 2023-06-28 | 3.19 | 3.79 | 3.33 | 3.7 | 0.005 | 0.78 | 0.0 | 0.05 | 9.56 | 0.00 | 2.195 | 2.24 | 0.18 | 8.6 | 91.4 | 0.0 | -4.48 | 0.65 | 0.74 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9699 | 1205 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YUD | 34104 | 2024-01-18 | 2022-08-17 | 2.98 | 3.24 | 3.03 | 3.3 | 0.008 | 0.95 | 0.0 | 0.06 | 13.24 | 0.01 | 2.303 | 2.09 | 0.00 | 4.9 | 95.1 | 0.0 | -0.42 | 0.62 | 0.78 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8441 | 1105 | 6 | 0 | 1 | 0 | 0 | logfile |