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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6S8N | 10125 | 2024-01-18 | 2019-07-10 | 3.1 | 3.26 | — | 3.3 | 0.012 | 1.73 | 0.0 | 0.06 | 16.96 | 0.01 | 1.791 | 6.47 | 0.12 | 8.7 | 91.1 | 0.2 | -6.61 | 0.69 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7831 | 970 | 8 | 0 | 7 | 0 | 0 | logfile |
✘ | 8D1B | 27121 | 2024-01-17 | 2022-05-27 | 3.57 | 3.85 | 3.45 | 3.8 | 0.006 | 1.09 | 0.0 | 0.05 | 14.42 | 0.01 | 2.084 | 19.71 | 0.28 | 24.1 | 75.9 | 0.0 | -6.32 | 0.76 | 0.81 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6724 | 874 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2024-01-17 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Lii | 4053 | 2024-01-17 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2024-01-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6G2J | 4345 | 2024-01-20 | 2018-03-23 | 3.3 | 3.41 | 3.49 | 3.4 | 0.009 | 1.17 | 0.0 | 1.03 | 13.01 | 0.01 | 1.499 | 6.66 | 0.06 | 14.9 | 84.7 | 0.4 | -5.96 | 0.59 | 0.77 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66811 | 8164 | 60 | 0 | 34 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2024-01-18 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.41 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2024-01-19 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2024-01-20 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 13.73 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 7ARJ | 11884 | 2024-01-18 | 2020-10-25 | 3.2 | 3.48 | — | 3.4 | 0.005 | 0.80 | 0.0 | 0.05 | 13.52 | 0.01 | 2.312 | 3.21 | 0.10 | 5.0 | 95.0 | 0.0 | -5.75 | 0.66 | 0.74 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9601 | 1262 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 8CBN | 16546 | 2024-01-20 | 2023-01-25 | 3.34 | 3.92 | 3.27 | 3.7 | 0.008 | 0.72 | 0.0 | 0.04 | 25.79 | 0.01 | 0.876 | 6.35 | 2.28 | 4.8 | 95.2 | 0.0 | -5.72 | 0.71 | 0.78 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13669 | 939 | 12 | 300 | 0 | 0 | 0 | logfile |
✘ | 7NFD | 12300 | 2024-01-19 | 2021-02-06 | 3.51 | 3.83 | — | 3.8 | 0.009 | 1.02 | 1.0 | 0.05 | 16.11 | 0.00 | 2.071 | 25.27 | 0.37 | 15.9 | 84.0 | 0.1 | -5.50 | 0.62 | 0.81 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12394 | 1582 | 9 | 0 | 5 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2024-01-18 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 7AHE | 11784 | 2024-01-19 | 2020-09-24 | 4.1 | 4.22 | 4.11 | 4.1 | 0.007 | 1.01 | 0.0 | 0.08 | 13.74 | 0.00 | 2.205 | 16.70 | 0.45 | 9.6 | 90.4 | 0.0 | -5.40 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10060 | 1308 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6HRA | 0257 | 2024-01-19 | 2018-09-26 | 3.7 | 3.89 | 3.68 | 3.8 | 0.007 | 0.93 | 0.0 | 0.05 | 9.85 | 0.01 | 2.227 | 6.64 | 0.18 | 7.4 | 92.6 | 0.0 | -5.34 | 0.70 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10818 | 1450 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 6E1P | 8960 | 2024-01-19 | 2018-07-10 | 3.7 | 3.93 | 3.55 | 3.9 | 0.010 | 1.30 | 1.0 | 0.06 | 14.00 | 0.01 | 1.571 | 10.25 | 0.18 | 6.9 | 92.9 | 0.2 | -5.32 | 0.47 | 0.68 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10697 | 1292 | 6 | 0 | 21 | 2 | 0 | logfile |
✘ | 5oJQ | 3566 | 2024-01-18 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U5K | 20648 | 2024-01-18 | 2019-08-27 | 3.5 | 3.54 | — | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 12.14 | 0.01 | 2.210 | 5.29 | 3.00 | 7.0 | 93.0 | 0.0 | -5.23 | 0.53 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110106 | 14520 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JRR | 9879 | 2024-01-17 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.94 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |