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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5Z1W | 6877 | 2024-01-20 | 2017-12-28 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.34 | — | — | 4.86 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.89 | 0.00 | 2.133 | 6.05 | 2.12 | 2.3 | 97.7 | 0.0 | 1.73 | — | 0.67 | 0.86 | 3.18 | 13824 | 1716 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 8CVi | 27008 | 2024-01-20 | 2022-05-18 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.49 | — | — | 1.22 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.35 | 0.00 | 2.089 | 10.90 | 1.79 | 4.0 | 96.0 | 0.0 | 3.61 | — | 0.58 | 0.85 | 0.95 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2024-01-18 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.62 | 0.00 | 2.079 | 19.50 | 0.04 | 8.2 | 91.4 | 0.5 | -1.33 | — | 0.90 | 0.83 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7PQ5 | 13587 | 2024-01-18 | 2021-09-16 | 3.17 | 3.58 | 3.09 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 15.55 | 0.01 | 2.255 | 3.50 | 2.82 | 4.5 | 95.3 | 0.2 | -0.13 | 0.85 | 0.87 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8512 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FHQ | 29099 | 2024-01-18 | 2022-12-14 | 2.81 | 3.05 | 2.83 | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.303 | 4.02 | 0.65 | 3.5 | 96.5 | 0.0 | -1.14 | 0.62 | 0.86 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7oWG | 13097 | 2024-01-19 | 2021-06-18 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 114114 | 7078 | 8 | 0 | 110 | 0 | 57040 | logfile |
✘ | 6XEV | 22154 | 2024-01-19 | 2020-06-14 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10545 | 1312 | 8 | 0 | 25 | 0 | 0 | logfile |
✘ | 8GY3 | 34369 | 2024-01-19 | 2022-09-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10320 | 1326 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7LUM | 23522 | 2024-01-19 | 2021-02-22 | 4.5 | 4.68 | — | 4.6 | 0.007 | 0.85 | 0.0 | 0.05 | 14.02 | 0.00 | 1.970 | 26.15 | 0.00 | 7.5 | 92.3 | 0.2 | -0.70 | 0.79 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63978 | 8374 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2024-01-20 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.022 | 1.83 | 0.0 | 0.11 | 13.68 | 0.01 | 2.200 | 1.61 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 8EA0 | 27970 | 2024-01-17 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.66 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7URC | 26708 | 2024-01-17 | 2022-04-21 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5561 | 658 | 4 | 0 | 12 | 0 | 0 | logfile |
✘ | 6Y3Y | 10676 | 2024-01-17 | 2020-02-19 | 3.39 | 3.74 | 3.39 | 3.7 | 0.008 | 1.04 | 0.0 | 0.07 | 17.44 | 0.01 | 2.297 | 4.49 | 0.33 | 10.5 | 89.5 | 0.0 | -4.44 | 0.80 | 0.83 | 4.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5854 | 664 | 12 | 0 | 34 | 0 | 0 | logfile |
✘ | 6VM3 | 21237 | 2024-01-20 | 2020-01-27 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15180 | 1810 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 6VM0 | 21234 | 2024-01-20 | 2020-01-27 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15355 | 1815 | 15 | 0 | 20 | 0 | 0 | logfile |
✘ | 7MSX | 23971 | 2024-01-17 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 7SQ9 | 25380 | 2024-01-20 | 2021-11-04 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15810 | 1876 | 16 | 0 | 18 | 16 | 0 | logfile |
✘ | 6VM2 | 21236 | 2024-01-20 | 2020-01-27 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15355 | 1815 | 15 | 0 | 20 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2024-01-18 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JAF | 6346 | 2024-01-20 | 2015-06-08 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |