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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5LMU | 4080 | 2024-01-17 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 26.67 | 0.02 | 1.289 | 21.15 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✘ | 8CSW | 26973 | 2024-01-17 | 2022-05-13 | 2.5 | 2.22 | 2.46 | 2.3 | 0.007 | 0.86 | 0.0 | 0.06 | 14.46 | 0.01 | 2.219 | 5.03 | 2.33 | 1.2 | 98.8 | 0.0 | 0.83 | 0.64 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5332 | 657 | 1 | 0 | 0 | 165 | 0 | logfile |
✘ | 8B4o | 15851 | 2024-01-17 | 2022-09-20 | 2.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6156 | 772 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 7YDQ | 33756 | 2024-01-17 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.006 | 0.83 | 0.0 | 0.04 | 17.50 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7URC | 26708 | 2024-01-17 | 2022-04-21 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5561 | 658 | 4 | 0 | 12 | 0 | 0 | logfile |
✘ | 8CTK | 26993 | 2024-01-17 | 2022-05-15 | 3.52 | 3.87 | 3.55 | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 14.37 | 0.00 | 2.347 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -1.07 | 0.54 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3042 | 376 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7NKZ | 12451 | 2024-01-17 | 2021-02-19 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6424 | 792 | 4 | 0 | 5 | 42 | 0 | logfile |
✘ | 8HC8 | 34655 | 2024-01-17 | 2022-11-01 | 3.95 | 4.00 | 3.84 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.60 | 0.01 | 2.317 | 5.70 | 0.56 | 4.2 | 95.8 | 0.0 | -1.17 | 0.64 | 0.70 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4832 | 628 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6CT0 | 7610 | 2024-01-17 | 2018-03-21 | 3.1 | 3.17 | — | 3.2 | 0.010 | 1.57 | 0.0 | 0.07 | 17.75 | 0.01 | 2.273 | 14.28 | 17.87 | 2.7 | 97.3 | 0.0 | -2.00 | 0.74 | 0.86 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105600 | 13740 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WPo | 32686 | 2024-01-17 | 2022-01-24 | 3.5 | 3.78 | — | 3.7 | 0.014 | 1.64 | 6.0 | 0.11 | 11.46 | 0.01 | 2.359 | 5.22 | 0.48 | 2.6 | 97.3 | 0.1 | -0.13 | 0.70 | 0.79 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6829 | 867 | 8 | 0 | 17 | 0 | 0 | logfile |
✘ | 7XGR | 33187 | 2024-01-17 | 2022-04-06 | 2.6 | 3.38 | 2.47 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 18.88 | 0.00 | 2.259 | 8.70 | 2.17 | 6.3 | 93.7 | 0.0 | -0.28 | 0.52 | 0.75 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4340 | 546 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EA0 | 27970 | 2024-01-17 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.66 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6Y3Y | 10676 | 2024-01-17 | 2020-02-19 | 3.39 | 3.74 | 3.39 | 3.7 | 0.008 | 1.04 | 0.0 | 0.07 | 17.44 | 0.01 | 2.297 | 4.49 | 0.33 | 10.5 | 89.5 | 0.0 | -4.44 | 0.80 | 0.83 | 4.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5854 | 664 | 12 | 0 | 34 | 0 | 0 | logfile |
✘ | 7MSX | 23971 | 2024-01-17 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 6VYH | 21460 | 2024-01-17 | 2020-02-26 | 3.0 | 3.13 | — | 3.1 | 0.013 | 1.11 | 1.0 | 0.06 | 14.40 | 0.01 | 1.922 | 11.42 | 2.00 | 8.8 | 90.0 | 1.2 | -4.54 | 0.66 | 0.81 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6093 | 860 | 5 | 0 | 2 | 1 | 0 | logfile |
✘ | 7D5i | 30582 | 2024-01-17 | 2020-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6232 | 793 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2024-01-17 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 8E4L | 27891 | 2024-01-17 | 2022-08-18 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54556 | 3592 | 8 | 0 | 16 | 0 | 26580 | logfile |
✘ | 7SVA | 25446 | 2024-01-17 | 2021-11-18 | 3.26 | 3.94 | 3.27 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.61 | 0.01 | 2.078 | 8.79 | 0.29 | 5.6 | 94.4 | 0.0 | -0.44 | 0.79 | 0.72 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6515 | 792 | 3 | 11 | 1 | 0 | 0 | logfile |
✘ | 7FDi | 31544 | 2024-01-17 | 2021-07-16 | 3.12 | 3.24 | — | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.54 | 0.00 | 2.109 | 15.52 | 0.15 | 3.7 | 96.3 | 0.0 | -0.19 | 0.61 | 0.78 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6403 | 788 | 4 | 0 | 5 | 0 | 0 | logfile |