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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8iJB | 35484 | 2024-01-18 | 2023-02-27 | 3.23 | 3.78 | 1.14 | 3.6 | 0.006 | 1.54 | 20.0 | 0.11 | 19.14 | 0.02 | 1.921 | 16.10 | 8.31 | 8.3 | 91.4 | 0.3 | -1.26 | 0.65 | 0.80 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8842 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7EFD | 31084 | 2024-01-17 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-01-18 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 6SAG | 10130 | 2024-01-17 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 7ZZ6 | 15036 | 2024-01-18 | 2022-05-25 | 2.15 | 2.39 | 2.12 | 2.1 | 0.006 | 0.68 | 0.0 | 0.04 | 17.30 | 0.00 | 1.385 | 8.71 | 3.48 | 2.9 | 97.1 | 0.0 | 0.64 | 0.91 | 0.90 | 4.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8257 | 1017 | 6 | 0 | 6 | 157 | 0 | logfile |
✘ | 8BL2 | 16100 | 2024-01-18 | 2022-11-09 | 2.3 | 2.29 | 2.26 | 2.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.84 | 0.00 | 1.872 | 11.53 | 1.01 | 1.2 | 98.8 | 0.0 | 0.70 | 0.76 | 0.75 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57128 | 7336 | 42 | 0 | 42 | 2780 | 0 | logfile |
✘ | 8PKD | 17735 | 2024-01-17 | 2023-06-26 | 2.33 | 2.42 | 2.31 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 15.00 | 0.00 | 2.246 | 3.95 | 0.00 | 2.7 | 97.3 | 0.0 | 1.55 | 0.65 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4844 | 600 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 7ZZ2 | 15032 | 2024-01-17 | 2022-05-25 | 2.48 | 2.80 | 2.37 | 2.1 | 0.005 | 0.76 | 0.0 | 0.05 | 17.25 | 0.01 | 2.132 | 4.21 | 3.27 | 2.2 | 97.8 | 0.0 | -0.30 | 0.90 | 0.89 | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4366 | 541 | 1 | 0 | 3 | 57 | 0 | logfile |
✘ | 7M3N | 23658 | 2024-01-17 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QJV | 14023 | 2024-01-20 | 2021-12-17 | 3.29 | 3.75 | 2.41 | 3.4 | 0.012 | 2.13 | 7.0 | 0.11 | 11.77 | 0.01 | 2.497 | 0.72 | 0.13 | 9.5 | 90.5 | 0.0 | -2.07 | 0.44 | 0.77 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✘ | 7UZE | 26886 | 2024-01-20 | 2022-05-09 | 2.4 | 2.27 | 2.42 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.97 | 0.00 | 2.040 | 3.56 | 0.68 | 3.0 | 96.6 | 0.4 | 1.69 | 0.66 | 0.88 | 6.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14969 | 988 | 12 | 0 | 4 | 113 | 7392 | logfile |
✘ | 8P2S | 17373 | 2024-01-18 | 2023-05-16 | 2.4 | 2.06 | 2.43 | 1.8 | 0.003 | 0.54 | 0.0 | 0.04 | 12.82 | 0.00 | 2.120 | 8.76 | 3.01 | 4.7 | 95.2 | 0.1 | 0.29 | 0.79 | 0.75 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9694 | 1201 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8CSW | 26973 | 2024-01-17 | 2022-05-13 | 2.5 | 2.22 | 2.46 | 2.3 | 0.007 | 0.86 | 0.0 | 0.06 | 14.46 | 0.01 | 2.219 | 5.03 | 2.33 | 1.2 | 98.8 | 0.0 | 0.83 | 0.64 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5332 | 657 | 1 | 0 | 0 | 165 | 0 | logfile |
✘ | 8CE7 | 16600 | 2024-01-19 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XGR | 33187 | 2024-01-17 | 2022-04-06 | 2.6 | 3.38 | 2.47 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 18.88 | 0.00 | 2.259 | 8.70 | 2.17 | 6.3 | 93.7 | 0.0 | -0.28 | 0.52 | 0.75 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4340 | 546 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AG4 | 15415 | 2024-01-19 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H87 | 34531 | 2024-01-18 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.83 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✘ | 8E49 | 27884 | 2024-01-19 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.42 | 0.0 | 0.03 | 22.35 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |
✘ | 8JR9 | 36593 | 2024-01-18 | 2023-06-16 | 2.57 | 2.48 | 2.53 | 2.7 | 0.005 | 0.65 | 0.0 | 0.04 | 17.65 | 0.00 | 2.240 | 5.96 | 0.24 | 2.2 | 97.8 | 0.0 | 1.80 | 0.57 | 0.74 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7893 | 1014 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7NVL | 12605 | 2024-01-20 | 2021-03-15 | 2.5 | 2.63 | 2.55 | 2.6 | 0.005 | 0.78 | 0.0 | 0.05 | 16.49 | 0.00 | 1.915 | 8.72 | 1.56 | 3.2 | 96.7 | 0.0 | -2.02 | 0.60 | 0.73 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66477 | 8626 | 50 | 0 | 48 | 27 | 0 | logfile |