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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8E49 | 27884 | 2024-01-19 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.42 | 0.0 | 0.03 | 22.35 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |
✘ | 8F54 | 28860 | 2024-01-20 | 2022-11-11 | 2.5 | 2.67 | 2.56 | 2.7 | 0.003 | 0.45 | 0.0 | 0.03 | 11.59 | 0.00 | 2.491 | 0.57 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.68 | 0.76 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66960 | 4020 | 60 | 0 | 0 | 0 | 33840 | logfile |
✘ | 7UTN | 26782 | 2024-01-18 | 2022-04-27 | 2.74 | 3.33 | 2.90 | 3.1 | 0.007 | 0.68 | 0.0 | 0.04 | 22.97 | 0.00 | 2.080 | 8.58 | 0.00 | 1.8 | 98.2 | 0.0 | 0.01 | 0.86 | 0.88 | 4.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8003 | 397 | 4 | 228 | 0 | 0 | 0 | logfile |
✘ | 8C02 | 16353 | 2024-01-17 | 2022-12-15 | 4.09 | 4.26 | 4.03 | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 13.16 | 0.01 | 2.225 | 19.86 | 0.44 | 4.1 | 95.9 | 0.0 | 1.51 | 0.58 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4242 | 549 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2024-01-19 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CKW | 30392 | 2024-01-20 | 2020-07-20 | 3.22 | 3.34 | — | 3.3 | 0.002 | 0.48 | 0.0 | 0.04 | 13.67 | 0.00 | 2.178 | 15.84 | 1.74 | 3.0 | 97.0 | 0.0 | -3.30 | 0.58 | 0.71 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8103 | 1035 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 7Si3 | 25137 | 2024-01-20 | 2021-10-12 | 3.19 | 3.21 | — | 3.2 | 0.003 | 1.19 | 0.0 | 0.04 | 13.00 | 0.00 | 2.038 | 2.15 | 0.00 | 1.5 | 98.5 | 0.0 | 3.72 | 0.48 | 0.77 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13500 | 873 | 1 | 0 | 2 | 0 | 6901 | logfile |
✘ | 7WZ3 | 32903 | 2024-01-18 | 2022-02-16 | 4.1 | 3.52 | — | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 11.64 | 0.00 | 2.022 | 2.41 | 0.06 | 2.8 | 97.2 | 0.0 | -4.27 | 0.62 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58551 | 7652 | 22 | 0 | 6 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2024-01-20 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 7W0H | 32242 | 2024-01-20 | 2021-11-18 | 3.4 | 3.64 | — | 3.6 | 0.007 | 0.77 | 0.0 | 0.04 | 18.61 | 0.01 | 2.191 | 8.69 | 0.20 | 4.0 | 96.0 | 0.0 | 1.21 | 0.82 | 0.89 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66850 | 8140 | 70 | 0 | 40 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2024-01-19 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WSi | 32759 | 2024-01-17 | 2022-01-29 | 3.32 | 3.90 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 12.25 | 0.00 | 2.122 | 8.82 | 0.00 | 7.9 | 92.1 | 0.0 | -0.23 | 0.66 | 0.77 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5701 | 743 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oJL | 12955 | 2024-01-19 | 2021-05-16 | 3.3 | 3.67 | 3.30 | 3.4 | 0.003 | 0.46 | 0.0 | 0.04 | 12.89 | 0.00 | 1.827 | 7.40 | 2.98 | 8.2 | 91.8 | 0.1 | -2.78 | 0.86 | 0.82 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12842 | 1498 | 4 | 33 | 1 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2024-01-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6i52 | 4410 | 2024-01-17 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✘ | 7VHP | 32002 | 2024-01-20 | 2021-09-22 | 3.27 | 3.30 | — | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 13.46 | 0.00 | 1.149 | 15.64 | 0.32 | 3.1 | 96.8 | 0.0 | 1.82 | 0.78 | 0.73 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66600 | 8304 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D3S | 30566 | 2024-01-18 | 2020-09-20 | 2.9 | 2.73 | 2.75 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.237 | 10.24 | 0.00 | 4.0 | 96.0 | 0.0 | -2.28 | 0.56 | 0.75 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8338 | 1048 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7U6V | 26381 | 2024-01-20 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✘ | 7R88 | 24311 | 2024-01-19 | 2021-06-26 | 3.5 | 3.76 | — | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 12.49 | 0.00 | 2.274 | 5.35 | 1.02 | 3.5 | 96.5 | 0.0 | -1.50 | 0.69 | 0.85 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10787 | 1368 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7C77 | 30294 | 2024-01-18 | 2020-05-23 | 3.3 | 3.60 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.65 | 0.00 | 2.209 | 9.34 | 1.88 | 5.0 | 94.9 | 0.1 | -2.63 | 0.58 | 0.75 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9762 | 1183 | 9 | 0 | 20 | 0 | 0 | logfile |