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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BD3 | 15973 | 2024-01-20 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BVR | 16269 | 2024-01-17 | 2022-12-05 | 3.52 | 4.00 | 3.61 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 17.01 | 0.01 | 2.178 | 12.22 | 0.19 | 4.6 | 95.4 | 0.0 | 0.64 | 0.62 | 0.78 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4806 | 617 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 5LJV | 4062 | 2024-01-20 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2024-01-18 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2024-01-17 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2024-01-17 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PP6 | 13580 | 2024-01-20 | 2021-09-13 | 3.4 | 4.07 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 12.33 | 0.00 | 1.846 | 6.09 | 0.19 | 9.2 | 90.8 | 0.0 | -2.04 | 0.77 | 0.76 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66562 | 4592 | 22 | 0 | 28 | 92 | 31702 | logfile |
✘ | 7YVU | 34138 | 2024-01-18 | 2022-08-19 | 3.2 | 2.47 | 3.22 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 14.81 | 0.01 | 2.103 | 6.82 | 0.29 | 5.5 | 94.0 | 0.5 | -0.60 | 0.76 | 0.80 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6456 | 791 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2024-01-19 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JR9 | 36593 | 2024-01-18 | 2023-06-16 | 2.57 | 2.48 | 2.53 | 2.7 | 0.005 | 0.65 | 0.0 | 0.04 | 17.65 | 0.00 | 2.240 | 5.96 | 0.24 | 2.2 | 97.8 | 0.0 | 1.80 | 0.57 | 0.74 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7893 | 1014 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8H0Q | 34414 | 2024-01-18 | 2022-09-30 | 3.3 | 3.78 | 3.20 | 3.7 | 0.019 | 0.59 | 0.0 | 0.09 | 9.28 | 0.00 | 2.260 | 7.81 | 0.62 | 1.0 | 99.0 | 0.0 | -1.95 | 0.63 | 0.72 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8949 | 1134 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 8P98 | 17575 | 2024-01-18 | 2023-06-05 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7830 | 956 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JVH | 36674 | 2024-01-18 | 2023-06-28 | 3.19 | 3.79 | 3.33 | 3.7 | 0.005 | 0.78 | 0.0 | 0.05 | 9.56 | 0.00 | 2.195 | 2.24 | 0.18 | 8.6 | 91.4 | 0.0 | -4.48 | 0.65 | 0.74 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9699 | 1205 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iX1 | 35786 | 2024-01-18 | 2023-03-31 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7896 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 8H86 | 34530 | 2024-01-18 | 2022-10-21 | 2.56 | 2.71 | 2.58 | 2.7 | 0.014 | 1.56 | 0.0 | 0.08 | 18.47 | 0.03 | 2.296 | 6.79 | 0.45 | 4.0 | 96.0 | 0.0 | -0.67 | 0.46 | 0.73 | 5.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7080 | 765 | 6 | 0 | 48 | 63 | 0 | logfile |
✘ | 8HRN | 34979 | 2024-01-17 | 2022-12-15 | 3.9 | 4.18 | 3.98 | 4.0 | 0.005 | 0.91 | 0.0 | 0.05 | 17.07 | 0.01 | 2.080 | 24.49 | 0.95 | 3.4 | 96.6 | 0.0 | -1.15 | 0.76 | 0.69 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 597 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YoX | 33989 | 2024-01-20 | 2022-08-02 | 3.95 | 4.33 | 4.09 | 4.1 | 0.006 | 1.31 | 8.0 | 0.10 | 27.06 | 0.01 | 0.786 | 33.58 | 46.70 | 1.0 | 98.8 | 0.2 | 2.84 | 0.82 | 0.70 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13878 | 1749 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BL2 | 16100 | 2024-01-18 | 2022-11-09 | 2.3 | 2.29 | 2.26 | 2.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.84 | 0.00 | 1.872 | 11.53 | 1.01 | 1.2 | 98.8 | 0.0 | 0.70 | 0.76 | 0.75 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57128 | 7336 | 42 | 0 | 42 | 2780 | 0 | logfile |
✘ | 8iWX | 35782 | 2024-01-18 | 2023-03-31 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |