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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 1oED | 1044 | 2023-12-07 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 224.94 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.004 | 1.06 | 0.0 | 0.05 | 15.88 | 0.01 | 2.224 | 22.69 | 0.69 | 2.3 | 97.7 | 0.0 | 1.70 | 2.92 | 0.63 | 0.45 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2023-12-09 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.96 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 17.96 | 0.01 | 1.304 | 29.48 | 0.97 | 3.6 | 96.3 | 0.1 | -0.10 | 2.43 | 0.78 | 0.74 | 0.37 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2023-12-07 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.6 | 0.005 | 1.21 | 0.0 | 0.05 | 17.07 | 0.01 | 2.016 | 34.63 | 0.49 | 11.5 | 87.3 | 1.2 | -2.51 | 2.08 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H40 | 34476 | 2023-12-16 | 2022-10-09 | 3.6 | 4.14 | 3.56 | 3.3 | 0.059 | 3.51 | 163.0 | 0.18 | 20.66 | 0.02 | 0.727 | 175.67 | 4.55 | 35.8 | 60.4 | 3.8 | -7.43 | 0.85 | 0.79 | 0.76 | 3.3 | 0.004 | 0.92 | 0.0 | 0.05 | 20.67 | 0.01 | 1.897 | 21.40 | 0.48 | 12.1 | 87.3 | 0.6 | -2.64 | 1.94 | 0.87 | 0.81 | 0.95 | 34833 | 4130 | 11 | 120 | 0 | 0 | 0 | logfile |
✔ | 3J7H | 5995 | 2023-12-15 | 2014-06-30 | 3.2 | 2.58 | 3.45 | 3.4 | 0.005 | 1.17 | 0.0 | 0.06 | 17.98 | 0.01 | 1.085 | 132.80 | 12.24 | 2.5 | 97.4 | 0.2 | 2.39 | 0.77 | 0.79 | 2.04 | 3.4 | 0.006 | 0.81 | 0.0 | 0.05 | 17.42 | 0.00 | 1.990 | 15.82 | 0.89 | 3.9 | 96.1 | 0.0 | -0.35 | 1.64 | 0.79 | 0.87 | 2.62 | 32828 | 4088 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7UPH | 26666 | 2023-12-16 | 2022-04-15 | 4.18 | 5.35 | 4.33 | 4.2 | 0.007 | 1.00 | 1.0 | 0.05 | 24.48 | 0.02 | 1.193 | 122.79 | 0.02 | 12.5 | 86.5 | 1.0 | -2.90 | 0.63 | 0.35 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 23.63 | 0.01 | 1.174 | 96.02 | 0.04 | 14.2 | 85.2 | 0.6 | -2.70 | 1.32 | 0.87 | 0.77 | — | 141080 | 5442 | 49 | 4556 | 0 | 0 | 625 | logfile |
✔ | 4Ci0 | 2513 | 2023-12-14 | 2013-12-05 | 3.36 | 3.43 | — | 3.4 | 0.014 | 1.93 | 24.0 | 1.74 | 23.87 | 0.03 | 1.915 | 119.42 | 39.11 | 3.4 | 96.5 | 0.1 | 1.78 | 0.71 | 0.70 | 0.31 | 3.4 | 0.014 | 2.74 | 0.0 | 0.54 | 18.70 | 0.00 | 2.126 | 19.49 | 0.74 | 4.2 | 95.8 | 0.0 | -0.41 | 2.13 | 0.82 | 0.86 | 1.35 | 83472 | 10716 | 72 | 0 | 108 | 0 | 0 | logfile |
✔ | 5VC7 | 8658 | 2023-12-13 | 2017-03-31 | 3.9 | 4.38 | — | 4.3 | 0.007 | 1.50 | 0.0 | 0.07 | 12.73 | 0.01 | 1.173 | 117.97 | 7.14 | 1.5 | 98.2 | 0.4 | -1.98 | 0.77 | 0.72 | 1.21 | 4.3 | 0.003 | 0.83 | 0.0 | 0.04 | 15.45 | 0.00 | 2.042 | 16.12 | 0.43 | 2.4 | 97.6 | 0.0 | -0.34 | 1.74 | 0.79 | 0.81 | 0.72 | 23298 | 3264 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2023-12-09 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.50 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.93 | 0.0 | 0.05 | 17.47 | 0.00 | 1.839 | 72.88 | 1.99 | 20.9 | 75.3 | 3.8 | -4.57 | 0.92 | 0.39 | 0.73 | 1.16 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 7CR4 | 30447 | 2023-12-11 | 2020-08-12 | 3.9 | 4.24 | — | 3.9 | 0.008 | 0.65 | 0.0 | 0.04 | 13.14 | 0.00 | 1.833 | 102.74 | 0.00 | 4.6 | 95.4 | 0.0 | -2.89 | 0.59 | 0.76 | 0.53 | 3.9 | 0.004 | 0.87 | 1.0 | 0.04 | 16.37 | 0.00 | 2.127 | 26.39 | 0.60 | 2.9 | 97.1 | 0.0 | 0.40 | 1.42 | 0.57 | 0.76 | 0.47 | 15988 | 1968 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2023-12-10 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.15 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-12-07 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 13.91 | 0.00 | 2.223 | 14.60 | 0.00 | 8.3 | 91.5 | 0.2 | -2.31 | 3.59 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-12-12 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.004 | 1.04 | 0.0 | 0.05 | 13.71 | 0.01 | 1.950 | 32.75 | 0.09 | 15.2 | 83.8 | 1.0 | -3.85 | 4.19 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2023-12-09 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2023-12-11 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.88 | 0.0 | 0.04 | 13.21 | 0.00 | 2.219 | 17.86 | 0.00 | 6.4 | 93.2 | 0.4 | 0.16 | 1.78 | 0.67 | 0.52 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 7DA4 | 30622 | 2023-12-07 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.04 | 10.84 | 0.00 | 2.229 | 17.17 | 0.00 | 21.7 | 78.3 | 0.0 | -5.61 | 3.07 | 0.36 | 0.60 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2023-12-09 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.41 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.0 | 0.004 | 0.92 | 0.0 | 0.04 | 20.79 | 0.01 | 2.088 | 17.33 | 1.28 | 8.8 | 89.8 | 1.5 | -2.84 | 1.27 | 0.55 | 0.79 | 2.18 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 3J5P | 5778 | 2023-12-11 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.53 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 79.06 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.4 | 0.004 | 0.91 | 0.0 | 0.04 | 16.97 | 0.00 | 2.085 | 17.32 | 0.41 | 5.3 | 94.6 | 0.1 | 0.51 | 2.09 | 0.74 | 0.79 | 0.11 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 5Y4o | 6805 | 2023-12-09 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.003 | 0.77 | 0.0 | 0.04 | 17.56 | 0.00 | 2.042 | 14.00 | 0.45 | 7.0 | 92.5 | 0.5 | -0.18 | 1.75 | 0.59 | 0.72 | 1.52 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-12-09 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 16.23 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.90 | 0.0 | 0.05 | 12.25 | 0.00 | 2.047 | 18.43 | 0.00 | 7.5 | 91.6 | 0.9 | -0.57 | 1.16 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |