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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TTS | 26122 | 2023-12-11 | 2022-02-01 | 2.9 | 12.34 | — | — | 0.008 | 0.99 | 1.0 | 0.08 | 12.97 | 0.01 | 1.788 | 5.64 | 0.30 | 3.2 | 96.6 | 0.1 | 1.89 | 0.77 | 0.55 | -0.20 | — | 0.003 | 0.61 | 0.0 | 0.04 | 13.91 | 0.00 | 1.887 | 21.87 | 0.30 | 3.5 | 96.5 | 0.1 | 2.14 | 1.03 | 0.69 | 0.40 | -0.20 | 18793 | 2686 | 12 | 0 | 23 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2023-12-11 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.68 | 0.0 | 0.04 | 14.52 | 0.00 | 2.006 | 31.08 | 0.17 | 4.9 | 95.1 | 0.0 | 0.20 | 4.65 | 0.78 | 0.54 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PTL | 13630 | 2023-12-12 | 2021-09-27 | 4.9 | 10.06 | 4.95 | — | 0.005 | 1.01 | 0.0 | 0.06 | 22.82 | 0.01 | 2.401 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.79 | — | — | 0.008 | 0.91 | 0.0 | 0.04 | 27.28 | 0.01 | 1.689 | 87.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.53 | 0.91 | 0.92 | — | 23080 | 0 | 1 | 720 | 0 | 0 | 7743 | logfile |
✔ | 8E5P | 27917 | 2023-12-12 | 2022-08-22 | 4.4 | 9.89 | 6.01 | 8.2 | 0.003 | 0.64 | 0.0 | 0.04 | 11.38 | 0.00 | 1.299 | 26.66 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.61 | 0.33 | — | 8.2 | 0.002 | 0.65 | 0.0 | 0.04 | 11.77 | 0.00 | 1.278 | 15.08 | 0.00 | 2.3 | 97.7 | 0.0 | 0.81 | 1.54 | 0.86 | 0.77 | — | 20038 | 2502 | 13 | 8 | 18 | 0 | 0 | logfile |
✔ | 7ELD | 31181 | 2023-12-09 | 2021-04-09 | 4.6 | 9.12 | — | 7.4 | 0.012 | 1.41 | 6.0 | 0.11 | 19.72 | 0.00 | 2.446 | 8.52 | 10.68 | 2.9 | 96.2 | 0.9 | 3.37 | 0.79 | 0.50 | — | 7.4 | 0.003 | 0.69 | 0.0 | 0.04 | 18.13 | 0.00 | 2.078 | 24.16 | 0.00 | 5.2 | 94.3 | 0.5 | 0.31 | 1.41 | 0.89 | 0.77 | — | 11282 | 1137 | 2 | 109 | 0 | 0 | 0 | logfile |
✔ | 7YMY | 33947 | 2023-12-14 | 2022-07-29 | 4.96 | 9.09 | 5.33 | 5.2 | 0.006 | 0.96 | 3.0 | 0.06 | 15.46 | 0.01 | 2.203 | 11.52 | 0.50 | 8.6 | 91.2 | 0.2 | -2.07 | 0.89 | 0.80 | — | 5.2 | 0.003 | 0.65 | 0.0 | 0.05 | 14.18 | 0.00 | 2.090 | 23.15 | 0.00 | 7.7 | 92.3 | 0.0 | -1.40 | 1.24 | 0.91 | 0.85 | — | 27677 | 3498 | 15 | 0 | 46 | 0 | 0 | logfile |
✔ | 8KG9 | 37215 | 2023-12-09 | 2023-08-17 | 4.52 | 8.93 | 5.25 | 4.5 | 0.004 | 0.77 | 0.0 | 0.05 | 14.79 | 0.00 | 1.015 | 36.87 | 0.74 | 6.0 | 93.8 | 0.3 | -0.28 | 0.88 | 0.79 | — | 4.5 | 0.006 | 0.85 | 0.0 | 0.05 | 14.93 | 0.01 | 1.733 | 52.11 | 0.00 | 7.7 | 92.2 | 0.2 | -1.10 | 1.13 | 0.88 | 0.77 | — | 63507 | 7910 | 25 | 23 | 15 | 0 | 0 | logfile |
✔ | 7NFC | 12299 | 2023-12-15 | 2021-02-05 | 4.14 | 8.92 | 4.34 | 7.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.63 | 0.00 | 2.040 | 16.12 | 0.06 | 6.8 | 93.1 | 0.1 | 0.21 | 0.89 | 0.79 | — | 7.1 | 0.003 | 0.69 | 0.0 | 0.04 | 15.46 | 0.00 | 2.093 | 18.39 | 0.00 | 7.0 | 92.9 | 0.0 | -0.24 | 0.68 | 0.90 | 0.81 | — | 89069 | 10887 | 18 | 110 | 40 | 0 | 0 | logfile |
✔ | 8E5L | 27914 | 2023-12-12 | 2022-08-22 | 4.2 | 8.91 | 5.82 | 7.6 | 0.003 | 0.64 | 0.0 | 0.04 | 11.74 | 0.00 | 1.299 | 26.62 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.63 | 0.37 | — | 7.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.08 | 0.00 | 0.981 | 23.57 | 0.00 | 3.1 | 96.9 | 0.0 | 0.49 | 1.28 | 0.89 | 0.83 | — | 20058 | 2502 | 13 | 9 | 18 | 0 | 0 | logfile |
✔ | 7T20 | 25607 | 2023-12-12 | 2021-12-02 | 4.7 | 8.85 | — | 7.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.59 | 0.00 | 2.079 | 7.50 | 3.24 | 2.3 | 97.6 | 0.2 | 0.68 | 0.91 | 0.76 | — | 7.6 | 0.003 | 0.62 | 0.0 | 0.04 | 11.89 | 0.00 | 1.934 | 19.44 | 0.00 | 3.4 | 96.6 | 0.0 | 1.16 | 1.63 | 0.92 | 0.72 | — | 21106 | 2661 | 11 | 10 | 8 | 0 | 0 | logfile |
✔ | 8K3Y | 36867 | 2023-12-16 | 2023-07-17 | 4.42 | 8.76 | 4.94 | 4.5 | 0.006 | 1.15 | 0.0 | 0.07 | 14.64 | 0.01 | 2.232 | 17.66 | 0.05 | 6.9 | 93.1 | 0.0 | -3.10 | 0.86 | 0.60 | — | 4.5 | 0.004 | 0.81 | 0.0 | 0.05 | 14.35 | 0.01 | 1.995 | 41.32 | 0.00 | 8.3 | 91.7 | 0.0 | -1.81 | 0.45 | 0.89 | 0.74 | — | 34589 | 4396 | 10 | 0 | 4 | 0 | 0 | logfile |
✔ | 5UoW | 8579 | 2023-12-16 | 2017-02-01 | 4.5 | 8.74 | — | 7.2 | 0.011 | 1.84 | 17.0 | 0.10 | 14.83 | 0.02 | 1.072 | 54.88 | 10.98 | 4.5 | 94.5 | 1.0 | -0.55 | 0.64 | 0.54 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 11.36 | 0.00 | 2.102 | 16.30 | 0.05 | 6.1 | 93.7 | 0.2 | -0.35 | 2.57 | 0.78 | 0.81 | — | 24347 | 3186 | 15 | 0 | 446 | 0 | 0 | logfile |
✔ | 7ELE | 31182 | 2023-12-09 | 2021-04-09 | 4.9 | 8.62 | — | 7.5 | 0.007 | 1.16 | 0.0 | 0.06 | 21.16 | 0.01 | 2.210 | 17.86 | 8.44 | 9.1 | 90.1 | 0.8 | -3.55 | 0.87 | 0.71 | — | 7.5 | 0.004 | 0.77 | 0.0 | 0.04 | 18.23 | 0.00 | 2.016 | 31.77 | 0.10 | 9.8 | 90.0 | 0.2 | -1.69 | 1.68 | 0.88 | 0.77 | — | 10733 | 1137 | 2 | 83 | 0 | 0 | 0 | logfile |
✔ | 7UY8 | 26867 | 2023-12-09 | 2022-05-06 | 4.5 | 8.56 | 4.38 | 4.2 | 0.003 | 0.63 | 1.0 | 0.05 | 14.55 | 0.00 | 2.207 | 8.69 | 0.00 | 6.1 | 93.9 | 0.0 | -0.66 | 0.79 | 0.60 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.44 | 0.00 | 2.152 | 20.87 | 0.00 | 5.8 | 94.1 | 0.1 | -0.35 | 1.42 | 0.92 | 0.85 | — | 9552 | 1161 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YMX | 33946 | 2023-12-14 | 2022-07-29 | 4.44 | 8.52 | 4.33 | 4.6 | 0.004 | 0.83 | 2.0 | 0.05 | 15.04 | 0.01 | 2.240 | 7.67 | 0.33 | 5.9 | 94.1 | 0.1 | -1.19 | 0.89 | 0.80 | — | 4.6 | 0.004 | 0.65 | 0.0 | 0.04 | 13.91 | 0.00 | 2.058 | 23.22 | 0.00 | 7.0 | 93.0 | 0.0 | -0.84 | 1.24 | 0.92 | 0.74 | — | 27775 | 3498 | 18 | 0 | 53 | 0 | 0 | logfile |
✔ | 7W0F | 32241 | 2023-12-10 | 2021-11-18 | 4.55 | 8.43 | — | 7.5 | 0.003 | 0.64 | 1.0 | 0.04 | 16.66 | 0.00 | 1.356 | 21.15 | 1.19 | 4.4 | 94.7 | 0.8 | -0.94 | 0.71 | 0.38 | — | 7.3 | 0.003 | 0.69 | 0.0 | 0.04 | 16.64 | 0.00 | 2.116 | 24.38 | 0.00 | 6.3 | 93.7 | 0.1 | -0.98 | 1.54 | 0.87 | 0.72 | — | 14097 | 1492 | 6 | 94 | 0 | 0 | 0 | logfile |
✔ | 5TJi | 8414 | 2023-12-14 | 2016-10-04 | 3.8 | 8.35 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 11.75 | 0.00 | 2.483 | 1.87 | 0.41 | 6.0 | 93.8 | 0.2 | -3.10 | 0.73 | 0.80 | 0.32 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 12.64 | 0.00 | 2.134 | 10.94 | 0.14 | 2.6 | 97.4 | 0.0 | 0.71 | 0.70 | 0.73 | 0.84 | 0.89 | 27720 | 3528 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8oSL | 17160 | 2023-12-10 | 2023-04-19 | 4.9 | 8.34 | 6.27 | 6.8 | 0.005 | 0.80 | 0.0 | 0.05 | 28.01 | 0.00 | 2.363 | 2.30 | 0.00 | 1.1 | 98.9 | 0.0 | -0.07 | 0.81 | 0.71 | — | 7.0 | 0.012 | 1.04 | 0.0 | 0.06 | 35.58 | 0.01 | 1.810 | 186.47 | 0.00 | 13.0 | 86.5 | 0.5 | -2.30 | 3.51 | 0.87 | 0.83 | — | 13541 | 1441 | 14 | 294 | 0 | 0 | 301 | logfile |
✔ | 6MDM | 9100 | 2023-12-12 | 2018-09-04 | 4.4 | 8.28 | — | 4.2 | 0.013 | 1.55 | 1.0 | 0.09 | 12.23 | 0.01 | 1.944 | 4.73 | 0.10 | 3.9 | 95.8 | 0.3 | -3.62 | 0.88 | 0.72 | — | 4.2 | 0.004 | 0.65 | 0.0 | 0.06 | 12.30 | 0.00 | 1.891 | 18.89 | 0.03 | 6.9 | 93.1 | 0.0 | -1.38 | 0.79 | 0.94 | 0.84 | — | 73171 | 4651 | 17 | 0 | 11 | 0 | 36604 | logfile |
✔ | 6XMG | 22258 | 2023-12-08 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 20.81 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.04 | 22.40 | 0.01 | 1.908 | 49.19 | 0.20 | 11.5 | 88.5 | 0.0 | -2.34 | 1.33 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |