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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6KiV | 9999 | 2023-12-14 | 2019-07-20 | 4.0 | 4.16 | — | 4.0 | 0.007 | 0.90 | 0.0 | 0.05 | 22.70 | 0.01 | 2.263 | 5.24 | 0.00 | 9.6 | 90.4 | 0.0 | -3.80 | 0.75 | 0.75 | — | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 24.11 | 0.00 | 2.135 | 13.01 | 0.50 | 5.7 | 94.3 | 0.0 | -1.72 | 0.85 | 0.76 | 0.77 | — | 20719 | 1865 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6KiU | 9998 | 2023-12-14 | 2019-07-20 | 3.2 | 3.29 | — | 3.2 | 0.007 | 0.86 | 0.0 | 0.05 | 22.07 | 0.01 | 2.178 | 3.22 | 0.00 | 6.6 | 93.4 | 0.0 | -3.67 | 0.72 | 0.78 | 2.19 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 23.42 | 0.00 | 2.156 | 8.25 | 0.06 | 4.3 | 95.7 | 0.0 | -0.92 | 1.25 | 0.74 | 0.83 | 1.63 | 20503 | 1839 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6KiQ | 9997 | 2023-12-10 | 2019-07-19 | 3.62 | 3.66 | — | 3.8 | 0.035 | 3.74 | 145.0 | 0.27 | 19.81 | 0.04 | 2.201 | 12.20 | 14.75 | 18.6 | 70.7 | 10.7 | -6.77 | 0.58 | 0.71 | 1.68 | 3.5 | 0.003 | 0.79 | 0.0 | 0.04 | 17.15 | 0.01 | 2.016 | 12.53 | 0.36 | 12.1 | 87.3 | 0.6 | -2.66 | 1.19 | 0.62 | 0.75 | 1.32 | 15093 | 968 | 3 | 0 | 0 | 0 | 7444 | logfile |
✔ | 6Kio | 9996 | 2023-12-10 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 17.12 | 0.00 | 1.994 | 11.47 | 0.24 | 7.2 | 92.4 | 0.4 | -1.20 | 1.65 | 0.65 | 0.77 | 1.29 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 6KHJ | 9990 | 2023-12-15 | 2019-07-15 | 3.0 | 3.14 | — | 3.1 | 0.009 | 1.30 | 0.0 | 0.06 | 17.68 | 0.01 | 2.258 | 6.87 | 0.41 | 7.8 | 92.1 | 0.0 | -4.07 | 0.73 | 0.86 | 3.41 | 3.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.61 | 0.00 | 2.134 | 12.05 | 1.76 | 7.5 | 92.5 | 0.0 | 0.12 | 1.14 | 0.73 | 0.88 | 2.57 | 31027 | 3877 | 26 | 0 | 20 | 0 | 0 | logfile |
✔ | 6KHi | 9989 | 2023-12-15 | 2019-07-15 | 3.0 | 3.34 | — | 3.3 | 0.008 | 1.25 | 0.0 | 0.09 | 17.45 | 0.01 | 2.257 | 7.33 | 0.27 | 8.9 | 91.0 | 0.0 | -4.35 | 0.73 | 0.84 | 2.98 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 16.70 | 0.00 | 2.164 | 12.93 | 2.34 | 7.9 | 92.1 | 0.0 | -0.50 | 1.13 | 0.74 | 0.86 | 2.66 | 32635 | 4095 | 29 | 0 | 19 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2023-12-09 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.05 | 12.77 | 0.00 | 2.091 | 18.31 | 0.01 | 7.4 | 91.8 | 0.9 | -0.89 | 2.83 | 0.23 | 0.28 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFH | 9973 | 2023-12-12 | 2019-07-07 | 3.6 | 3.70 | — | 3.7 | 0.007 | 0.73 | 0.0 | 0.05 | 14.75 | 0.00 | 2.255 | 9.85 | 0.00 | 12.3 | 87.7 | 0.0 | -3.15 | 0.66 | 0.82 | 0.94 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 17.60 | 0.00 | 2.197 | 9.34 | 0.41 | 8.2 | 91.8 | 0.0 | 0.16 | 0.63 | 0.61 | 0.81 | 0.91 | 20840 | 2544 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFG | 9972 | 2023-12-12 | 2019-07-07 | 3.8 | 3.91 | — | 3.9 | 0.007 | 0.77 | 0.0 | 0.05 | 14.04 | 0.00 | 2.148 | 13.10 | 0.67 | 11.5 | 88.5 | 0.0 | -4.38 | 0.63 | 0.82 | 1.64 | 3.9 | 0.005 | 0.78 | 0.0 | 0.04 | 16.41 | 0.00 | 2.166 | 13.65 | 1.09 | 8.9 | 91.1 | 0.0 | -0.56 | 1.36 | 0.63 | 0.82 | 1.37 | 22264 | 2704 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFF | 9971 | 2023-12-12 | 2019-07-07 | 3.8 | 3.93 | — | 3.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.08 | 0.00 | 2.182 | 8.35 | 0.35 | 9.2 | 90.8 | 0.0 | -2.57 | 0.67 | 0.82 | 1.08 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 17.22 | 0.00 | 2.146 | 9.89 | 0.71 | 8.6 | 91.4 | 0.0 | 0.20 | 0.60 | 0.64 | 0.82 | 0.59 | 21192 | 2576 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KF3 | 9960 | 2023-12-13 | 2019-07-06 | 3.9 | 4.00 | 3.77 | 4.0 | 0.008 | 1.33 | 1.0 | 0.07 | 12.71 | 0.01 | 2.102 | 4.54 | 4.74 | 13.7 | 85.5 | 0.8 | -5.00 | 0.71 | 0.74 | 1.75 | 4.0 | 0.004 | 0.83 | 0.0 | 0.05 | 15.63 | 0.01 | 2.003 | 11.65 | 0.28 | 12.0 | 87.9 | 0.1 | -2.43 | 2.22 | 0.72 | 0.76 | 1.16 | 26375 | 3297 | 15 | 0 | 6 | 0 | 0 | logfile |
✔ | 7CGP | 9958 | 2023-12-09 | 2020-07-01 | 3.7 | 3.87 | — | 3.8 | 0.006 | 0.66 | 0.0 | 0.04 | 15.25 | 0.00 | 1.852 | 10.54 | 0.53 | 5.1 | 94.9 | 0.0 | -2.68 | 0.68 | 0.81 | 1.54 | 3.8 | 0.004 | 0.95 | 0.0 | 0.05 | 17.84 | 0.00 | 2.104 | 15.94 | 0.90 | 4.0 | 96.0 | 0.0 | 0.69 | 1.49 | 0.68 | 0.81 | 0.90 | 12433 | 1569 | 16 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KA4 | 9954 | 2023-12-11 | 2019-06-20 | 3.4 | 3.49 | — | 3.4 | 0.006 | 0.82 | 0.0 | 0.05 | 13.68 | 0.01 | 2.076 | 15.29 | 0.00 | 5.0 | 95.0 | 0.0 | -0.10 | 0.77 | 0.83 | 1.80 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 15.91 | 0.00 | 2.155 | 8.57 | 0.15 | 3.6 | 96.4 | 0.0 | 1.28 | 0.49 | 0.79 | 0.85 | 1.21 | 17500 | 2136 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9Q | 9952 | 2023-12-13 | 2019-06-17 | 3.1 | 3.28 | — | 3.5 | 0.007 | 1.09 | 4.0 | 0.06 | 11.35 | 0.01 | 1.554 | 9.55 | 0.29 | 6.3 | 93.6 | 0.1 | -3.33 | 0.51 | 0.77 | 2.45 | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 14.47 | 0.00 | 2.064 | 17.13 | 0.59 | 5.5 | 94.5 | 0.0 | -1.18 | 0.57 | 0.51 | 0.80 | 1.98 | 76902 | 10451 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2023-12-11 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 4.6 | 0.004 | 1.22 | 0.0 | 0.05 | 17.69 | 0.00 | 2.013 | 28.27 | 0.53 | 1.4 | 98.6 | 0.0 | -0.68 | 3.70 | 0.67 | 0.84 | 0.35 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K99 | 9947 | 2023-12-11 | 2019-06-14 | 4.1 | 6.62 | 4.25 | 6.7 | 0.003 | 0.72 | 0.0 | 0.04 | 12.51 | 0.00 | 2.388 | 7.15 | 1.46 | 7.6 | 92.4 | 0.0 | -2.97 | 0.73 | 0.83 | — | 6.6 | 0.003 | 0.92 | 0.0 | 0.05 | 13.30 | 0.00 | 2.098 | 19.08 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 1.83 | 0.74 | 0.87 | — | 8244 | 996 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K7N | 9942 | 2023-12-09 | 2019-06-07 | 2.84 | 2.94 | 2.68 | 2.9 | 0.013 | 1.53 | 0.0 | 0.07 | 15.82 | 0.01 | 2.046 | 6.84 | 0.44 | 8.0 | 91.9 | 0.1 | -3.74 | 0.61 | 0.85 | 3.92 | 2.9 | 0.004 | 0.68 | 0.0 | 0.04 | 16.19 | 0.00 | 1.922 | 10.19 | 1.92 | 7.0 | 93.0 | 0.0 | -0.51 | 0.47 | 0.65 | 0.87 | 3.42 | 10544 | 1308 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 6K7L | 9939 | 2023-12-09 | 2019-06-07 | 2.83 | 2.93 | 2.65 | 2.9 | 0.012 | 1.15 | 0.0 | 0.07 | 15.49 | 0.01 | 1.976 | 4.79 | 0.17 | 7.5 | 92.3 | 0.2 | -3.27 | 0.58 | 0.83 | 3.57 | 2.9 | 0.004 | 0.67 | 0.0 | 0.04 | 16.59 | 0.00 | 1.915 | 8.59 | 1.22 | 6.2 | 93.7 | 0.1 | -0.06 | 0.46 | 0.71 | 0.86 | 3.03 | 10615 | 1317 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 6K7K | 9937 | 2023-12-09 | 2019-06-07 | 3.04 | 3.15 | 2.84 | 3.1 | 0.011 | 1.45 | 0.0 | 0.07 | 15.18 | 0.01 | 2.000 | 5.46 | 0.35 | 7.1 | 92.9 | 0.0 | -3.51 | 0.63 | 0.85 | 3.58 | 3.1 | 0.004 | 0.66 | 0.0 | 0.05 | 16.16 | 0.00 | 1.869 | 9.03 | 0.61 | 5.7 | 94.3 | 0.0 | -0.14 | 0.98 | 0.69 | 0.88 | 2.96 | 10586 | 1309 | 5 | 0 | 10 | 0 | 0 | logfile |
✔ | 6K7J | 9935 | 2023-12-09 | 2019-06-07 | 3.08 | 3.21 | 2.88 | 3.2 | 0.013 | 1.23 | 0.0 | 0.07 | 15.56 | 0.01 | 2.159 | 5.68 | 0.17 | 8.6 | 91.2 | 0.2 | -3.98 | 0.57 | 0.82 | 3.51 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 16.23 | 0.00 | 2.173 | 10.05 | 0.26 | 5.6 | 94.2 | 0.2 | -0.93 | 0.94 | 0.67 | 0.84 | 3.11 | 10602 | 1311 | 5 | 0 | 8 | 0 | 0 | logfile |