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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9W | 6306 | 2023-12-13 | 2015-03-16 | 3.9 | 3.93 | — | 3.8 | 0.010 | 1.50 | 0.0 | 0.03 | 23.30 | 0.02 | 1.433 | 8.85 | 0.26 | 6.0 | 92.0 | 2.0 | -1.66 | 0.74 | 0.72 | 0.72 | 3.8 | 0.004 | 0.73 | 0.0 | 0.04 | 23.95 | 0.00 | 2.007 | 18.34 | 1.42 | 7.6 | 91.8 | 0.6 | -0.46 | 1.35 | 0.80 | 0.85 | 1.06 | 135425 | 5661 | 54 | 4675 | 0 | 0 | 0 | logfile |
✔ | 7QV1 | 14157 | 2023-12-15 | 2022-01-19 | 3.5 | 3.50 | — | 3.2 | 0.002 | 0.51 | 0.0 | 0.03 | 22.88 | 0.00 | 1.575 | 5.96 | 0.41 | 5.1 | 94.8 | 0.1 | -2.06 | 0.73 | 0.82 | 1.19 | 3.2 | 0.005 | 0.71 | 0.0 | 0.04 | 23.23 | 0.01 | 1.911 | 16.87 | 0.75 | 7.8 | 92.2 | 0.1 | -1.43 | 3.30 | 0.75 | 0.85 | 1.23 | 140774 | 5254 | 53 | 4635 | 24 | 0 | 0 | logfile |
✔ | 6o8W | 0656 | 2023-12-15 | 2019-03-12 | 3.53 | 4.07 | — | 3.6 | 0.011 | 1.07 | 2.0 | 0.05 | 22.15 | 0.01 | 2.100 | 5.95 | 0.50 | 14.6 | 85.2 | 0.2 | -4.56 | 0.80 | 0.75 | 1.33 | 3.6 | 0.006 | 0.71 | 1.0 | 0.04 | 22.50 | 0.01 | 2.011 | 15.26 | 0.85 | 13.0 | 86.8 | 0.2 | -2.61 | 1.66 | 0.87 | 0.84 | 1.12 | 139953 | 5206 | 55 | 4623 | 4 | 0 | 0 | logfile |
✔ | 6HA1 | 0176 | 2023-12-15 | 2018-08-07 | 3.1 | 3.55 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.07 | 23.52 | 0.01 | 1.892 | 7.10 | 0.90 | 8.8 | 90.7 | 0.6 | -3.85 | 0.78 | 0.79 | 2.71 | 3.3 | 0.005 | 0.68 | 0.0 | 0.04 | 23.39 | 0.01 | 2.042 | 16.19 | 0.86 | 9.1 | 90.7 | 0.2 | -1.34 | 0.63 | 0.83 | 0.87 | 1.93 | 140824 | 5299 | 52 | 4622 | 1 | 0 | 0 | logfile |
✔ | 6V3A | 21031 | 2023-12-16 | 2019-11-25 | 2.82 | 3.02 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 21.84 | 0.02 | 1.898 | 5.96 | 0.07 | 2.8 | 97.2 | 0.1 | -1.23 | 0.82 | 0.82 | 2.96 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 22.18 | 0.01 | 1.721 | 6.87 | 2.41 | 4.3 | 95.6 | 0.1 | 0.18 | 1.13 | 0.84 | 0.88 | 2.95 | 142113 | 5457 | 74 | 4615 | 95 | 520 | 0 | logfile |
✔ | 8B7Y | 15905 | 2023-12-16 | 2022-10-03 | 3.0 | 2.45 | 2.96 | 2.8 | 0.005 | 0.76 | 4.0 | 0.05 | 22.97 | 0.01 | 1.792 | 5.28 | 3.80 | 5.7 | 93.5 | 0.8 | -1.45 | 0.77 | 0.78 | 2.97 | 2.8 | 0.008 | 0.87 | 4.0 | 0.05 | 22.85 | 0.01 | 1.683 | 12.96 | 3.43 | 5.4 | 94.4 | 0.3 | -1.41 | 1.13 | 0.78 | 0.80 | 2.89 | 141008 | 5315 | 70 | 4614 | 248 | 28 | 0 | logfile |
✔ | 6VWL | 21420 | 2023-12-15 | 2020-02-20 | 3.1 | 3.37 | — | 3.0 | 0.005 | 0.62 | 0.0 | 0.04 | 21.87 | 0.00 | 1.922 | 7.24 | 1.40 | 4.2 | 95.7 | 0.0 | -2.42 | 0.82 | 0.85 | 2.58 | 3.0 | 0.002 | 0.56 | 0.0 | 0.03 | 22.35 | 0.00 | 1.914 | 12.86 | 0.46 | 4.3 | 95.7 | 0.0 | -0.56 | 0.53 | 0.83 | 0.87 | 2.00 | 140603 | 5383 | 58 | 4593 | 34 | 0 | 0 | logfile |
✔ | 6VWM | 21421 | 2023-12-15 | 2020-02-20 | 3.4 | 3.74 | — | 3.2 | 0.003 | 0.59 | 0.0 | 0.03 | 22.34 | 0.00 | 1.963 | 7.00 | 1.73 | 5.0 | 95.0 | 0.0 | -3.11 | 0.82 | 0.83 | 1.68 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 23.02 | 0.00 | 1.840 | 16.95 | 0.65 | 7.0 | 93.0 | 0.0 | -1.64 | 2.10 | 0.83 | 0.86 | 1.56 | 140044 | 5342 | 57 | 4580 | 53 | 0 | 0 | logfile |
✔ | 6VWN | 21422 | 2023-12-15 | 2020-02-20 | 3.4 | 3.71 | — | 3.2 | 0.002 | 0.58 | 0.0 | 0.03 | 22.47 | 0.00 | 1.951 | 7.12 | 3.85 | 4.3 | 95.7 | 0.0 | -3.14 | 0.83 | 0.82 | 1.13 | 3.2 | 0.003 | 0.63 | 0.0 | 0.03 | 22.90 | 0.00 | 1.851 | 16.15 | 0.51 | 6.8 | 93.2 | 0.0 | -1.28 | 1.23 | 0.84 | 0.87 | 1.11 | 140036 | 5341 | 57 | 4580 | 55 | 0 | 0 | logfile |
✔ | 5NJT | 3656 | 2023-12-12 | 2017-03-29 | 3.8 | 4.18 | 4.07 | 4.1 | 0.008 | 1.18 | 0.0 | 0.06 | 24.12 | 0.01 | 1.178 | 8.95 | 1.58 | 14.2 | 85.2 | 0.6 | -5.34 | 0.76 | 0.78 | 1.08 | 4.1 | 0.005 | 0.78 | 0.0 | 0.04 | 24.34 | 0.01 | 1.873 | 22.83 | 0.99 | 13.0 | 86.9 | 0.1 | -2.76 | 1.65 | 0.77 | 0.80 | 0.87 | 133097 | 5596 | 51 | 4579 | 0 | 0 | 0 | logfile |
✔ | 5Li0 | 4050 | 2023-12-15 | 2016-07-13 | 3.8 | 3.91 | — | 3.8 | 0.014 | 1.18 | 1.0 | 0.05 | 21.62 | 0.01 | 1.920 | 5.40 | 0.20 | 14.9 | 84.7 | 0.5 | -5.64 | 0.75 | 0.79 | 1.99 | 3.8 | 0.007 | 0.81 | 0.0 | 0.04 | 21.74 | 0.01 | 1.338 | 15.37 | 1.14 | 11.8 | 88.0 | 0.2 | -2.75 | 0.70 | 0.76 | 0.81 | 1.27 | 140825 | 5396 | 58 | 4575 | 41 | 162 | 0 | logfile |
✔ | 5ND9 | 3625 | 2023-12-16 | 2017-03-07 | 3.7 | 3.83 | — | 3.7 | 0.011 | 1.19 | 1.0 | 0.06 | 22.29 | 0.01 | 0.889 | 8.98 | 1.12 | 19.3 | 80.1 | 0.6 | -5.81 | 0.76 | 0.77 | 1.23 | 3.7 | 0.005 | 0.74 | 0.0 | 0.04 | 22.04 | 0.01 | 2.019 | 17.75 | 1.17 | 13.7 | 86.3 | 0.0 | -3.04 | 1.34 | 0.78 | 0.81 | 0.76 | 141051 | 5461 | 52 | 4569 | 0 | 0 | 0 | logfile |
✔ | 5ND8 | 3624 | 2023-12-16 | 2017-03-07 | 3.7 | 3.81 | — | 3.7 | 0.009 | 1.03 | 1.0 | 0.05 | 21.82 | 0.01 | 1.019 | 7.55 | 0.73 | 17.3 | 82.1 | 0.6 | -5.61 | 0.77 | 0.77 | 1.17 | 3.7 | 0.004 | 0.69 | 0.0 | 0.04 | 21.78 | 0.01 | 1.997 | 17.18 | 1.14 | 11.4 | 88.5 | 0.1 | -2.76 | 1.30 | 0.80 | 0.82 | 1.25 | 141043 | 5462 | 52 | 4568 | 0 | 0 | 0 | logfile |
✔ | 6WNV | 21857 | 2023-12-16 | 2020-04-23 | 3.5 | 4.19 | 3.77 | 3.3 | 0.007 | 0.96 | 0.0 | 0.08 | 21.63 | 0.01 | 2.243 | 12.54 | 0.89 | 13.0 | 85.4 | 1.6 | -5.34 | 0.88 | 0.85 | 1.23 | 3.3 | 0.004 | 0.66 | 0.0 | 0.04 | 22.74 | 0.00 | 1.978 | 21.65 | 0.59 | 10.3 | 89.5 | 0.2 | -2.65 | 0.65 | 0.89 | 0.86 | 0.94 | 143036 | 5782 | 52 | 4564 | 0 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2023-12-15 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 23.26 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.005 | 0.61 | 0.0 | 0.04 | 23.17 | 0.00 | 1.861 | 11.90 | 4.56 | 6.5 | 93.5 | 0.0 | -1.85 | 0.65 | 0.77 | 0.85 | 2.12 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |
✔ | 6S0X | 10076 | 2023-12-15 | 2019-06-18 | 2.425 | 2.50 | — | 2.5 | 0.021 | 2.13 | 0.0 | 0.11 | 25.91 | 0.01 | 0.917 | 12.73 | 19.66 | 9.7 | 90.2 | 0.1 | -4.36 | 0.60 | 0.63 | 2.41 | 2.5 | 0.006 | 0.96 | 0.0 | 0.05 | 24.99 | 0.01 | 1.509 | 18.82 | 6.46 | 8.1 | 91.9 | 0.0 | -1.98 | 0.68 | 0.63 | 0.64 | 2.39 | 140672 | 5589 | 53 | 4559 | 1 | 0 | 0 | logfile |
✔ | 8G2U | 29681 | 2023-12-15 | 2023-02-06 | 3.0 | 2.24 | — | 3.2 | 0.004 | 0.85 | 0.0 | 0.04 | 22.68 | 0.01 | 2.144 | 4.34 | 0.00 | 5.2 | 94.8 | 0.1 | -1.95 | 0.46 | 0.32 | 0.25 | 3.0 | 0.007 | 0.72 | 0.0 | 0.04 | 22.78 | 0.01 | 1.910 | 9.66 | 4.00 | 7.3 | 92.7 | 0.1 | -0.90 | 1.08 | 0.86 | 0.88 | 2.69 | 140855 | 5496 | 51 | 4559 | 0 | 0 | 0 | logfile |
✔ | 7Y7G | 33664 | 2023-12-16 | 2022-06-22 | 2.34 | 1.96 | 2.32 | 2.2 | 0.010 | 0.75 | 0.0 | 0.05 | 21.66 | 0.03 | 1.891 | 4.79 | 0.00 | 3.8 | 96.1 | 0.1 | 0.22 | 0.53 | 0.79 | 4.24 | 2.2 | 0.003 | 0.72 | 0.0 | 0.04 | 22.03 | 0.01 | 1.826 | 6.54 | 2.01 | 3.7 | 96.2 | 0.1 | 0.20 | 1.23 | 0.61 | 0.84 | 4.10 | 141958 | 5591 | 62 | 4558 | 259 | 0 | 0 | logfile |
✔ | 7Y7E | 33662 | 2023-12-16 | 2022-06-22 | 2.41 | 2.04 | 2.43 | 2.4 | 0.010 | 0.73 | 0.0 | 0.05 | 21.64 | 0.02 | 1.875 | 5.01 | 0.04 | 3.5 | 96.4 | 0.1 | 0.13 | 0.54 | 0.80 | 3.53 | 2.3 | 0.004 | 0.73 | 0.0 | 0.04 | 22.08 | 0.01 | 1.850 | 6.53 | 2.84 | 3.9 | 96.0 | 0.1 | -0.14 | 0.92 | 0.62 | 0.85 | 3.60 | 141918 | 5591 | 63 | 4557 | 251 | 0 | 0 | logfile |
✔ | 7Y7C | 33660 | 2023-12-16 | 2022-06-22 | 2.51 | 2.15 | 2.49 | 2.4 | 0.011 | 0.74 | 0.0 | 0.05 | 21.70 | 0.02 | 1.866 | 5.70 | 0.09 | 3.7 | 96.2 | 0.1 | -0.01 | 0.59 | 0.82 | 3.80 | 2.4 | 0.004 | 0.74 | 0.0 | 0.04 | 22.10 | 0.01 | 1.840 | 6.42 | 2.73 | 3.9 | 96.0 | 0.1 | -0.07 | 1.22 | 0.68 | 0.87 | 3.60 | 141933 | 5591 | 62 | 4557 | 285 | 0 | 0 | logfile |