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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oEH | 20020 | 2023-12-15 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.09 | 0.00 | 2.203 | 12.28 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.52 | 0.40 | 0.80 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2023-12-14 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.110 | 23.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2023-12-13 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 5TAL | 8378 | 2023-12-10 | 2016-09-10 | 4.3 | 4.43 | 4.52 | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 10.26 | 0.01 | 1.373 | 5.27 | 0.62 | 10.5 | 89.3 | 0.1 | -5.03 | 0.79 | 0.78 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 12.19 | 0.00 | 2.028 | 14.19 | 0.01 | 11.0 | 88.9 | 0.1 | -1.75 | 0.86 | 0.80 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAN | 8380 | 2023-12-10 | 2016-09-10 | 4.3 | 4.50 | 4.44 | 4.3 | 0.005 | 0.91 | 4.0 | 0.05 | 9.94 | 0.01 | 1.372 | 5.67 | 0.47 | 10.4 | 89.4 | 0.2 | -4.91 | 0.80 | 0.79 | — | 4.3 | 0.005 | 0.83 | 0.0 | 0.04 | 12.31 | 0.00 | 2.061 | 17.99 | 0.01 | 12.2 | 87.6 | 0.1 | -1.92 | 1.52 | 0.81 | 0.81 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TA3 | 8377 | 2023-12-10 | 2016-09-09 | 4.4 | 4.71 | 4.62 | 4.5 | 0.004 | 0.90 | 0.0 | 0.05 | 10.08 | 0.01 | 1.374 | 5.28 | 0.54 | 10.8 | 89.1 | 0.1 | -4.86 | 0.81 | 0.78 | — | 4.5 | 0.004 | 0.76 | 0.0 | 0.04 | 11.91 | 0.00 | 2.032 | 17.71 | 0.00 | 11.4 | 88.5 | 0.1 | -1.80 | 0.87 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5T9V | 8376 | 2023-12-10 | 2016-09-09 | 4.4 | 4.79 | 4.75 | 4.5 | 0.004 | 0.90 | 4.0 | 0.05 | 10.07 | 0.01 | 1.374 | 5.64 | 0.54 | 10.5 | 89.3 | 0.2 | -4.84 | 0.81 | 0.78 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 11.91 | 0.00 | 2.091 | 18.75 | 0.00 | 12.2 | 87.7 | 0.1 | -1.56 | 1.51 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAQ | 8382 | 2023-12-10 | 2016-09-10 | 4.1 | 4.24 | 4.25 | 4.1 | 0.005 | 0.97 | 0.0 | 0.05 | 10.31 | 0.01 | 1.373 | 4.58 | 0.43 | 10.9 | 88.9 | 0.2 | -5.26 | 0.76 | 0.78 | — | 4.1 | 0.005 | 0.81 | 0.0 | 0.04 | 12.41 | 0.00 | 2.032 | 14.91 | 0.02 | 12.7 | 87.2 | 0.1 | -1.93 | 1.95 | 0.77 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAM | 8379 | 2023-12-10 | 2016-09-10 | 4.3 | 4.53 | 4.46 | 4.3 | 0.005 | 0.92 | 4.0 | 0.05 | 10.03 | 0.01 | 1.373 | 5.48 | 0.35 | 10.4 | 89.5 | 0.2 | -4.88 | 0.81 | 0.79 | — | 4.3 | 0.007 | 0.87 | 0.0 | 0.04 | 12.23 | 0.01 | 2.004 | 21.51 | 0.01 | 14.2 | 85.7 | 0.1 | -2.09 | 1.52 | 0.82 | 0.81 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAP | 8381 | 2023-12-10 | 2016-09-10 | 4.4 | 4.55 | 4.56 | 4.4 | 0.004 | 0.88 | 4.0 | 0.05 | 10.08 | 0.01 | 1.373 | 4.46 | 0.54 | 9.9 | 89.9 | 0.2 | -4.98 | 0.78 | 0.77 | — | 4.4 | 0.004 | 0.75 | 0.0 | 0.04 | 12.33 | 0.00 | 2.005 | 14.69 | 0.00 | 11.7 | 88.3 | 0.1 | -1.66 | 0.87 | 0.78 | 0.79 | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 5TAZ | 8390 | 2023-12-10 | 2016-09-10 | 4.3 | 4.46 | 4.86 | 4.3 | 0.004 | 0.86 | 4.0 | 0.05 | 9.92 | 0.01 | 1.373 | 4.79 | 0.58 | 10.2 | 89.6 | 0.2 | -5.04 | 0.74 | 0.73 | — | 4.3 | 0.005 | 0.81 | 0.0 | 0.04 | 12.08 | 0.00 | 2.051 | 18.58 | 0.00 | 12.9 | 86.9 | 0.2 | -2.20 | 0.91 | 0.76 | 0.77 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✔ | 5TAW | 8387 | 2023-12-10 | 2016-09-10 | 4.4 | 4.49 | 4.56 | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 5.05 | 0.39 | 10.3 | 89.5 | 0.2 | -4.87 | 0.79 | 0.75 | — | 4.2 | 0.005 | 0.79 | 0.0 | 0.04 | 11.93 | 0.00 | 2.017 | 18.09 | 0.00 | 13.0 | 86.9 | 0.1 | -1.94 | 1.99 | 0.80 | 0.79 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✔ | 5T9N | 8373 | 2023-12-10 | 2016-09-09 | 3.8 | 4.02 | 4.06 | 3.8 | 0.005 | 0.89 | 0.0 | 0.05 | 9.92 | 0.01 | 1.373 | 3.76 | 0.50 | 10.3 | 89.6 | 0.2 | -5.47 | 0.76 | 0.78 | 1.96 | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.00 | 0.00 | 2.101 | 11.84 | 0.34 | 11.8 | 88.1 | 0.2 | -1.67 | 0.83 | 0.76 | 0.81 | 1.25 | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5T9S | 8375 | 2023-12-10 | 2016-09-09 | 4.2 | 4.32 | 4.62 | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 9.86 | 0.01 | 1.373 | 3.99 | 0.50 | 10.3 | 89.5 | 0.1 | -5.16 | 0.72 | 0.73 | — | 4.2 | 0.005 | 0.79 | 0.0 | 0.04 | 12.46 | 0.00 | 2.092 | 15.41 | 0.00 | 13.6 | 86.3 | 0.1 | -2.08 | 0.92 | 0.73 | 0.76 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7JMi | 22395 | 2023-12-10 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.47 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | 4.2 | 0.003 | 0.89 | 0.0 | 0.05 | 11.88 | 0.01 | 2.082 | 18.52 | 0.00 | 11.8 | 88.0 | 0.2 | -3.52 | 0.83 | 0.81 | 0.69 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7JMF | 22392 | 2023-12-10 | 2020-07-31 | 4.5 | 5.06 | — | 4.7 | 0.005 | 0.98 | 0.0 | 0.05 | 10.23 | 0.01 | 1.373 | 8.08 | 0.36 | 11.2 | 88.6 | 0.2 | -4.91 | 0.54 | 0.27 | — | 7.7 | 0.004 | 0.94 | 0.0 | 0.05 | 11.59 | 0.01 | 1.145 | 21.14 | 0.00 | 11.3 | 88.5 | 0.2 | -3.66 | 1.53 | 0.76 | 0.56 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5T15 | 8342 | 2023-12-10 | 2016-08-17 | 3.6 | 3.80 | 3.88 | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 10.37 | 0.01 | 1.373 | 4.08 | 0.45 | 11.5 | 88.2 | 0.3 | -5.71 | 0.73 | 0.78 | 2.03 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 13.98 | 0.00 | 2.102 | 8.84 | 0.26 | 10.0 | 89.8 | 0.2 | -1.55 | 1.47 | 0.74 | 0.79 | 1.03 | 120796 | 13508 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5T9M | 8372 | 2023-12-10 | 2016-09-09 | 4.0 | 4.11 | 4.14 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 9.89 | 0.01 | 1.373 | 3.64 | 0.49 | 10.7 | 89.2 | 0.1 | -5.48 | 0.71 | 0.76 | — | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 14.38 | 0.00 | 2.137 | 11.30 | 0.25 | 10.1 | 89.8 | 0.1 | -1.73 | 0.86 | 0.72 | 0.78 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-12-09 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 14.04 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.17 | 223.0 | 0.13 | 17.19 | 0.02 | 1.395 | 136.01 | 0.02 | 44.5 | 52.1 | 3.4 | -7.53 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2023-12-10 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |