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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NTM | 12591 | 2023-12-09 | 2021-03-10 | 2.86 | 3.19 | 2.97 | 2.8 | 0.013 | 1.61 | 7.0 | 0.10 | 15.61 | 0.00 | 1.962 | 17.08 | 1.77 | 6.2 | 93.8 | 0.0 | -3.56 | 0.98 | 0.97 | 4.63 | 2.8 | 0.004 | 0.56 | 0.0 | 0.04 | 15.86 | 0.00 | 2.071 | 3.54 | 0.65 | 2.6 | 97.4 | 0.0 | -0.17 | 0.92 | 0.99 | 0.98 | 5.35 | 10336 | 1388 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7YC8 | 33736 | 2023-12-08 | 2022-07-01 | 4.14 | 7.25 | 4.31 | 4.1 | 0.002 | 0.51 | 0.0 | 0.02 | 23.89 | 0.00 | 2.079 | 18.05 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.96 | 0.87 | — | 4.1 | 0.006 | 0.82 | 0.0 | 0.04 | 26.81 | 0.01 | 1.979 | 69.18 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.26 | 0.97 | 0.89 | — | 8335 | 0 | 1 | 388 | 1 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-12-07 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 22.03 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.90 | 0.0 | 0.04 | 27.59 | 0.01 | 1.795 | 82.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.58 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 8PEP | 17634 | 2023-12-10 | 2023-06-14 | 3.33 | 4.07 | 3.32 | 3.4 | 0.004 | 0.72 | 0.0 | 0.05 | 28.76 | 0.01 | 2.092 | 9.54 | 0.13 | 1.9 | 98.1 | 0.0 | 0.85 | 0.92 | 0.87 | 1.55 | 3.4 | 0.004 | 0.61 | 0.0 | 0.03 | 27.44 | 0.00 | 2.090 | 10.60 | 0.38 | 3.2 | 96.8 | 0.0 | 1.58 | 2.45 | 0.95 | 0.91 | 1.35 | 13492 | 939 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 8A1R | 15084 | 2023-12-08 | 2022-06-01 | 3.6 | 5.63 | 3.62 | 3.4 | 0.011 | 0.86 | 0.0 | 0.06 | 16.56 | 0.00 | 2.097 | 11.72 | 0.00 | 5.2 | 94.8 | 0.0 | -0.06 | 0.91 | 0.75 | -0.28 | 3.5 | 0.003 | 0.70 | 1.0 | 0.05 | 16.27 | 0.00 | 2.166 | 19.65 | 0.10 | 6.8 | 93.2 | 0.0 | -0.39 | 0.62 | 0.95 | 0.86 | -0.05 | 9286 | 1186 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7BL6 | 12219 | 2023-12-15 | 2021-01-18 | 4.0 | 7.11 | — | 4.0 | 0.002 | 0.42 | 0.0 | 0.03 | 21.77 | 0.00 | 2.117 | 10.95 | 0.07 | 4.7 | 95.3 | 0.1 | -0.28 | 0.92 | 0.83 | — | 4.0 | 0.005 | 0.64 | 0.0 | 0.03 | 23.22 | 0.00 | 1.951 | 35.68 | 0.24 | 8.2 | 91.7 | 0.1 | -1.43 | 3.11 | 0.95 | 0.82 | — | 92769 | 3600 | 42 | 3016 | 5 | 27 | 0 | logfile |
✔ | 7YCi | 33740 | 2023-12-08 | 2022-07-01 | 2.98 | 4.31 | 3.09 | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 23.12 | 0.00 | 1.521 | 15.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.84 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.03 | 23.51 | 0.00 | 1.865 | 24.04 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.95 | 0.89 | — | 8474 | 0 | 2 | 395 | 4 | 0 | 0 | logfile |
✔ | 7PTQ | 13633 | 2023-12-11 | 2021-09-27 | 4.08 | 6.47 | 4.22 | 4.0 | 0.005 | 0.78 | 0.0 | 0.04 | 22.69 | 0.00 | 1.983 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.80 | — | 4.0 | 0.006 | 0.68 | 0.0 | 0.04 | 26.25 | 0.00 | 1.848 | 44.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.18 | 0.95 | 0.94 | — | 17434 | 0 | 1 | 544 | 0 | 0 | 5847 | logfile |
✔ | 7YCG | 33738 | 2023-12-08 | 2022-07-01 | 3.18 | 4.71 | 3.37 | 3.5 | 0.002 | 0.50 | 0.0 | 0.03 | 23.15 | 0.00 | 1.893 | 15.83 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.84 | — | 3.5 | 0.007 | 0.66 | 0.0 | 0.04 | 23.33 | 0.00 | 1.854 | 32.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.31 | 0.95 | 0.90 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2023-12-08 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 14.32 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.004 | 0.78 | 0.0 | 0.04 | 15.11 | 0.00 | 1.961 | 21.82 | 0.52 | 3.3 | 96.7 | 0.0 | 0.19 | 1.50 | 0.95 | 0.86 | 0.23 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8THU | 41272 | 2023-12-09 | 2023-07-18 | 3.1 | 3.86 | 3.08 | 3.2 | 0.004 | 0.68 | 0.0 | 0.04 | 28.56 | 0.01 | 1.528 | 5.35 | 0.00 | 2.2 | 97.8 | 0.0 | 1.40 | 0.93 | 0.89 | 2.77 | 3.2 | 0.004 | 0.57 | 0.0 | 0.03 | 28.42 | 0.00 | 2.194 | 8.77 | 0.16 | 2.4 | 97.6 | 0.0 | 2.69 | 0.29 | 0.94 | 0.90 | 2.11 | 11902 | 760 | 10 | 291 | 0 | 0 | 0 | logfile |
✔ | 7ZAi | 14581 | 2023-12-09 | 2022-03-22 | 2.6 | 3.30 | 2.61 | 2.9 | 0.016 | 0.74 | 0.0 | 0.04 | 20.67 | 0.06 | 1.408 | 3.42 | 0.64 | 2.9 | 97.1 | 0.0 | 0.54 | 0.93 | 0.94 | 4.39 | 2.9 | 0.005 | 1.15 | 0.0 | 0.04 | 21.66 | 0.01 | 1.569 | 6.53 | 0.80 | 3.2 | 96.8 | 0.0 | 0.56 | 1.76 | 0.94 | 0.95 | 4.15 | 64649 | 3694 | 54 | 1596 | 68 | 379 | 0 | logfile |
✔ | 8BLQ | 16113 | 2023-12-08 | 2022-11-10 | 3.97 | 5.74 | 4.01 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 12.20 | 0.00 | 2.201 | 11.99 | 0.10 | 4.9 | 95.1 | 0.0 | -3.81 | 0.92 | 0.71 | 1.20 | 3.9 | 0.006 | 0.76 | 0.0 | 0.04 | 13.93 | 0.00 | 2.073 | 31.80 | 0.10 | 9.0 | 91.0 | 0.0 | -1.84 | 1.65 | 0.94 | 0.81 | 1.26 | 9210 | 1220 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FoK | 29352 | 2023-12-11 | 2022-12-30 | 3.56 | 3.95 | 3.62 | 3.5 | 0.008 | 0.92 | 1.0 | 0.04 | 16.60 | 0.01 | 2.141 | 9.65 | 0.15 | 2.3 | 97.7 | 0.0 | 0.89 | 0.84 | 0.68 | 1.87 | 3.5 | 0.005 | 0.60 | 0.0 | 0.04 | 16.65 | 0.00 | 2.092 | 14.48 | 0.15 | 3.2 | 96.8 | 0.0 | 0.87 | 1.89 | 0.94 | 0.84 | 1.92 | 18827 | 2261 | 7 | 35 | 1 | 0 | 0 | logfile |
✔ | 7PMG | 13532 | 2023-12-09 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.18 | 2.0 | 0.07 | 15.64 | 0.01 | 1.308 | 4.64 | 0.09 | 0.2 | 99.8 | 0.0 | -1.37 | 0.92 | 0.85 | 3.45 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 15.18 | 0.00 | 1.969 | 6.52 | 0.00 | 1.4 | 98.6 | 0.0 | 1.74 | 1.27 | 0.94 | 0.89 | 2.87 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMF | 13531 | 2023-12-09 | 2021-09-02 | 3.4 | 4.29 | 3.46 | 3.3 | 0.010 | 1.00 | 1.0 | 0.06 | 15.29 | 0.01 | 1.313 | 3.78 | 0.09 | 0.2 | 99.8 | 0.0 | -1.44 | 0.91 | 0.83 | 3.07 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.05 | 0.00 | 1.966 | 6.07 | 0.28 | 1.3 | 98.7 | 0.0 | 1.94 | 1.69 | 0.94 | 0.88 | 2.44 | 10125 | 1256 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMi | 13535 | 2023-12-09 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.17 | 2.0 | 0.07 | 15.70 | 0.01 | 1.306 | 5.04 | 0.09 | 0.2 | 99.8 | 0.0 | -1.50 | 0.92 | 0.84 | 2.97 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 15.51 | 0.00 | 2.029 | 7.66 | 0.18 | 1.5 | 98.5 | 0.0 | 1.40 | 0.67 | 0.94 | 0.88 | 2.69 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PML | 13538 | 2023-12-09 | 2021-09-02 | 3.3 | 4.18 | 3.26 | 3.2 | 0.005 | 0.86 | 1.0 | 0.05 | 15.88 | 0.01 | 1.315 | 3.95 | 0.09 | 0.2 | 99.8 | 0.0 | -1.35 | 0.91 | 0.83 | 2.88 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.93 | 0.00 | 1.985 | 6.97 | 0.00 | 1.2 | 98.8 | 0.0 | 1.83 | 0.70 | 0.94 | 0.88 | 2.40 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PCQ | 13325 | 2023-12-08 | 2021-08-03 | 3.62 | 4.96 | 3.71 | 4.1 | 0.013 | 1.55 | 0.0 | 0.10 | 13.62 | 0.01 | 2.557 | 1.30 | 0.78 | 2.8 | 97.2 | 0.0 | 1.72 | 0.91 | 0.78 | 1.86 | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 14.54 | 0.00 | 2.064 | 13.32 | 0.52 | 2.0 | 98.0 | 0.0 | 2.38 | 2.23 | 0.94 | 0.89 | 1.83 | 7350 | 911 | 9 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMH | 13533 | 2023-12-09 | 2021-09-02 | 3.4 | 4.28 | 3.26 | 3.3 | 0.009 | 1.01 | 2.0 | 0.06 | 15.41 | 0.01 | 1.310 | 4.17 | 0.09 | 0.2 | 99.8 | 0.0 | -1.51 | 0.91 | 0.83 | 3.35 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.56 | 0.00 | 1.966 | 6.89 | 0.09 | 1.3 | 98.7 | 0.0 | 1.76 | 1.28 | 0.94 | 0.88 | 2.87 | 10154 | 1259 | 6 | 0 | 6 | 0 | 0 | logfile |