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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7ZC6 | 14622 | 2023-12-09 | 2022-03-25 | 4.27 | 4.35 | 4.17 | 4.3 | 0.014 | 1.95 | 12.0 | 2.55 | 19.30 | 0.01 | 2.098 | 12.11 | 10.79 | 6.1 | 93.1 | 0.8 | -1.59 | 0.66 | 0.74 | — | 4.3 | 0.020 | 3.90 | 0.0 | 0.76 | 15.13 | 0.00 | 1.130 | 11.04 | 0.00 | 3.8 | 96.2 | 0.0 | -0.96 | 0.73 | 0.68 | 0.77 | — | 11428 | 1513 | 11 | 0 | 12 | 0 | 0 | logfile |
✔ | 7AWT | 11930 | 2023-12-11 | 2020-11-09 | 2.73 | 3.29 | — | 3.2 | 0.012 | 1.12 | 8.0 | 1.95 | 14.80 | 0.01 | 1.618 | 15.63 | 1.58 | 8.0 | 92.0 | 0.0 | -3.38 | 0.67 | 0.74 | 3.45 | 3.2 | 0.015 | 2.83 | 0.0 | 0.58 | 16.49 | 0.00 | 2.057 | 9.14 | 2.03 | 5.4 | 94.6 | 0.0 | -1.03 | 1.19 | 0.64 | 0.71 | 3.01 | 18891 | 2375 | 17 | 0 | 18 | 125 | 0 | logfile |
✔ | 4Ci0 | 2513 | 2023-12-14 | 2013-12-05 | 3.36 | 3.43 | — | 3.4 | 0.014 | 1.93 | 24.0 | 1.74 | 23.87 | 0.03 | 1.915 | 119.42 | 39.11 | 3.4 | 96.5 | 0.1 | 1.78 | 0.71 | 0.70 | 0.31 | 3.4 | 0.014 | 2.74 | 0.0 | 0.54 | 18.70 | 0.00 | 2.126 | 19.49 | 0.74 | 4.2 | 95.8 | 0.0 | -0.41 | 2.13 | 0.82 | 0.86 | 1.35 | 83472 | 10716 | 72 | 0 | 108 | 0 | 0 | logfile |
✔ | 6Q9D | 4480 | 2023-12-14 | 2018-12-18 | 3.8 | 3.99 | — | 3.9 | 0.007 | 1.15 | 0.0 | 1.60 | 10.39 | 0.01 | 2.107 | 6.42 | 0.24 | 10.8 | 89.0 | 0.2 | -4.23 | 0.74 | 0.82 | 2.23 | 3.9 | 0.012 | 2.40 | 0.0 | 0.48 | 15.92 | 0.00 | 2.123 | 13.68 | 0.37 | 9.9 | 90.1 | 0.0 | -1.36 | 2.17 | 0.74 | 0.83 | 1.82 | 27662 | 3463 | 26 | 0 | 12 | 0 | 0 | logfile |
✔ | 6ZK9 | 11241 | 2023-12-14 | 2020-06-30 | 2.3 | 2.55 | — | 2.4 | 0.008 | 1.05 | 0.0 | 1.58 | 10.85 | 0.01 | 2.257 | 5.07 | 0.07 | 3.2 | 96.8 | 0.0 | -2.52 | 0.78 | 0.92 | 6.57 | 2.4 | 0.012 | 2.33 | 0.0 | 0.48 | 15.18 | 0.00 | 2.089 | 8.58 | 1.27 | 2.7 | 97.3 | 0.0 | 0.45 | 0.47 | 0.80 | 0.93 | 6.08 | 29587 | 3480 | 45 | 0 | 19 | 1472 | 0 | logfile |
✔ | 6ZJL | 11235 | 2023-12-16 | 2020-06-29 | 4.3 | 4.31 | — | 4.3 | 0.021 | 2.33 | 37.0 | 1.41 | 15.36 | 0.02 | 2.162 | 1.03 | 2.43 | 9.6 | 87.6 | 2.9 | -4.76 | 0.55 | 0.77 | — | 4.3 | 0.012 | 2.30 | 0.0 | 0.44 | 14.33 | 0.01 | 1.099 | 15.58 | 0.08 | 5.6 | 94.1 | 0.2 | -0.56 | 2.05 | 0.56 | 0.79 | — | 36057 | 4646 | 20 | 0 | 10 | 0 | 0 | logfile |
✔ | 7P7K | 13238 | 2023-12-16 | 2021-07-19 | 3.1 | 2.77 | — | 2.7 | 0.006 | 0.71 | 0.0 | 1.48 | 13.06 | 0.01 | 2.238 | 4.98 | 2.21 | 2.5 | 97.5 | 0.0 | -0.42 | 0.90 | 0.89 | 3.67 | 2.6 | 0.011 | 2.20 | 0.0 | 0.44 | 14.57 | 0.00 | 2.057 | 9.00 | 0.37 | 2.2 | 97.8 | 0.0 | 1.41 | 1.15 | 0.90 | 0.88 | 3.16 | 36531 | 4630 | 23 | 0 | 23 | 0 | 0 | logfile |
✔ | 7P61 | 13214 | 2023-12-16 | 2021-07-15 | 3.2 | 3.01 | — | 3.1 | 0.004 | 0.82 | 0.0 | 1.47 | 15.22 | 0.01 | 2.156 | 7.19 | 0.29 | 3.9 | 96.1 | 0.0 | -1.15 | 0.88 | 0.87 | 2.37 | 3.1 | 0.012 | 2.23 | 0.0 | 0.44 | 15.60 | 0.00 | 1.990 | 11.64 | 0.31 | 4.2 | 95.8 | 0.0 | 0.40 | 1.16 | 0.90 | 0.89 | 2.69 | 36690 | 4681 | 20 | 0 | 15 | 0 | 0 | logfile |
✔ | 7ZC5 | 14620 | 2023-12-16 | 2022-03-25 | 3.0 | 2.69 | — | 2.6 | 0.007 | 0.85 | 0.0 | 1.48 | 15.78 | 0.01 | 2.216 | 5.43 | 1.96 | 3.0 | 97.0 | 0.0 | -0.62 | 0.89 | 0.87 | 3.49 | 2.7 | 0.011 | 2.21 | 0.0 | 0.44 | 16.09 | 0.00 | 2.066 | 9.18 | 2.38 | 2.6 | 97.4 | 0.0 | 1.18 | 1.10 | 0.89 | 0.86 | 3.28 | 36692 | 4645 | 24 | 0 | 23 | 0 | 0 | logfile |
✔ | 6ZiY | 11231 | 2023-12-16 | 2020-06-26 | 4.25 | 4.27 | — | 4.2 | 0.021 | 2.37 | 37.0 | 1.39 | 16.06 | 0.02 | 1.919 | 1.33 | 3.34 | 9.9 | 86.7 | 3.4 | -4.76 | 0.54 | 0.76 | — | 4.2 | 0.012 | 2.29 | 0.0 | 0.44 | 14.55 | 0.00 | 2.144 | 12.61 | 0.03 | 5.3 | 94.5 | 0.2 | -0.40 | 2.06 | 0.55 | 0.78 | — | 36101 | 4646 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 7P62 | 13215 | 2023-12-16 | 2021-07-15 | 3.6 | 3.37 | — | 3.2 | 0.004 | 0.83 | 0.0 | 1.48 | 15.12 | 0.01 | 2.217 | 7.10 | 0.45 | 4.1 | 95.9 | 0.0 | -1.26 | 0.89 | 0.86 | 2.08 | 3.2 | 0.012 | 2.23 | 0.0 | 0.44 | 15.49 | 0.00 | 2.118 | 11.88 | 0.34 | 4.1 | 95.9 | 0.0 | 0.44 | 0.39 | 0.89 | 0.86 | 2.20 | 36597 | 4675 | 19 | 0 | 13 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2023-12-07 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.122 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.078 | 6.51 | 29.0 | 0.43 | 19.99 | 0.05 | 1.652 | 313.51 | 3.81 | 47.3 | 8.0 | 44.7 | -10.72 | 2.68 | 0.43 | 0.58 | 2.94 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2023-12-07 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.191 | 6.68 | 64.0 | 0.43 | 28.26 | 0.04 | 1.558 | 166.46 | 10.71 | 46.7 | 40.0 | 13.3 | -7.58 | 2.35 | 0.64 | 0.88 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2023-12-07 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.154 | 6.37 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.72 | 5.21 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.78 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L7P | 0850 | 2023-12-15 | 2019-11-02 | 3.6 | 3.75 | — | 3.8 | 0.008 | 1.40 | 0.0 | 1.89 | 46.20 | 0.01 | 2.044 | 8.89 | 0.25 | 6.6 | 93.4 | 0.0 | -4.32 | 0.62 | 0.74 | 0.45 | 3.7 | 0.008 | 3.06 | 0.0 | 0.42 | 34.53 | 0.00 | 2.124 | 8.01 | 0.31 | 6.1 | 93.9 | 0.0 | 0.46 | 0.73 | 0.68 | 0.83 | 1.44 | 32798 | 3896 | 28 | 0 | 66 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2023-12-14 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.110 | 23.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 7QKZ | 14058 | 2023-12-07 | 2021-12-19 | 2.65 | 2.79 | 2.28 | 3.2 | 0.013 | 2.86 | 9.0 | 0.34 | 18.75 | 0.02 | 2.498 | 0.59 | 0.00 | 9.9 | 90.1 | 0.0 | -1.61 | 0.34 | 0.61 | 7.02 | 3.3 | 0.006 | 1.51 | 0.0 | 0.38 | 18.97 | 0.01 | 2.249 | 14.18 | 0.00 | 1.2 | 98.8 | 0.0 | -0.83 | 5.07 | 0.34 | 0.64 | 6.93 | 1701 | 99 | 9 | 0 | 0 | 0 | 891 | logfile |
✔ | 7LQE | 23483 | 2023-12-08 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.20 | 240.0 | 0.38 | 25.46 | 0.02 | 1.745 | 134.94 | 4.40 | 60.8 | 38.2 | 1.0 | -8.67 | 1.67 | 0.65 | 0.89 | 2.25 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T6E | 25714 | 2023-12-07 | 2021-12-13 | 3.1 | 3.11 | — | 3.1 | 0.129 | 5.90 | 125.0 | 0.23 | 23.20 | 0.02 | 2.041 | 30.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.87 | — | 3.1 | 0.122 | 5.61 | 134.0 | 0.36 | 21.80 | 0.02 | 2.082 | 31.46 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.66 | 0.90 | — | 3480 | 0 | 60 | 0 | 300 | 0 | 0 | logfile |
✔ | 8DST | 27688 | 2023-12-07 | 2022-07-22 | 3.2 | 2.71 | 2.73 | 3.4 | 0.046 | 2.10 | 0.0 | 0.03 | 22.27 | 0.00 | 2.205 | 41.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.44 | 0.57 | — | 2.4 | 0.136 | 9.30 | 191.0 | 0.34 | 28.93 | 0.03 | 1.065 | 133.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.16 | 0.55 | 0.80 | — | 3078 | 0 | 54 | 0 | 270 | 0 | 0 | logfile |