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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B3A | 15824 | 2023-12-07 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.122 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.078 | 6.51 | 29.0 | 0.43 | 19.99 | 0.05 | 1.652 | 313.51 | 3.81 | 47.3 | 8.0 | 44.7 | -10.72 | 2.68 | 0.43 | 0.58 | 2.94 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2023-12-07 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.154 | 6.37 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.72 | 5.21 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.78 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2023-12-16 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.79 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.94 | 52.0 | 0.11 | 17.97 | 0.02 | 1.498 | 186.50 | 4.69 | 52.9 | 44.6 | 2.5 | -8.01 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 8oSL | 17160 | 2023-12-10 | 2023-04-19 | 4.9 | 8.34 | 6.27 | 6.8 | 0.005 | 0.80 | 0.0 | 0.05 | 28.01 | 0.00 | 2.363 | 2.30 | 0.00 | 1.1 | 98.9 | 0.0 | -0.07 | 0.81 | 0.71 | — | 7.0 | 0.012 | 1.04 | 0.0 | 0.06 | 35.58 | 0.01 | 1.810 | 186.47 | 0.00 | 13.0 | 86.5 | 0.5 | -2.30 | 3.51 | 0.87 | 0.83 | — | 13541 | 1441 | 14 | 294 | 0 | 0 | 301 | logfile |
✔ | 8oKR | 16930 | 2023-12-07 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.191 | 6.68 | 64.0 | 0.43 | 28.26 | 0.04 | 1.558 | 166.46 | 10.71 | 46.7 | 40.0 | 13.3 | -7.58 | 2.35 | 0.64 | 0.88 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-12-09 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 14.04 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.17 | 223.0 | 0.13 | 17.19 | 0.02 | 1.395 | 136.01 | 0.02 | 44.5 | 52.1 | 3.4 | -7.53 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2023-12-08 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.20 | 240.0 | 0.38 | 25.46 | 0.02 | 1.745 | 134.94 | 4.40 | 60.8 | 38.2 | 1.0 | -8.67 | 1.67 | 0.65 | 0.89 | 2.25 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DST | 27688 | 2023-12-07 | 2022-07-22 | 3.2 | 2.71 | 2.73 | 3.4 | 0.046 | 2.10 | 0.0 | 0.03 | 22.27 | 0.00 | 2.205 | 41.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.44 | 0.57 | — | 2.4 | 0.136 | 9.30 | 191.0 | 0.34 | 28.93 | 0.03 | 1.065 | 133.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.16 | 0.55 | 0.80 | — | 3078 | 0 | 54 | 0 | 270 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2023-12-08 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.77 | 3.33 | 46.5 | 53.5 | 0.0 | -7.05 | 1.54 | 0.65 | 0.83 | 2.52 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2023-12-09 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.37 | 186.0 | 0.30 | 23.67 | 0.02 | 1.819 | 120.04 | 3.70 | 35.6 | 64.4 | 0.0 | -8.04 | 1.65 | 0.66 | 0.86 | 3.86 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2023-12-09 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.25 | 190.0 | 0.31 | 24.04 | 0.02 | 1.610 | 112.99 | 4.28 | 40.1 | 59.5 | 0.3 | -8.01 | 3.50 | 0.66 | 0.87 | 3.32 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2023-12-13 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.18 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.98 | 122.0 | 0.27 | 22.17 | 0.03 | 1.601 | 112.52 | 5.39 | 44.5 | 49.2 | 6.3 | -8.59 | 2.58 | 0.80 | 0.86 | 1.95 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 6oDY | 20024 | 2023-12-14 | 2019-03-27 | 3.8 | 3.40 | — | 3.2 | 0.010 | 1.59 | 18.0 | 0.11 | 15.38 | 0.01 | 1.264 | 18.28 | 3.15 | 16.6 | 83.3 | 0.0 | -5.02 | 0.66 | 0.62 | 1.16 | 3.2 | 0.030 | 3.05 | 5.0 | 0.14 | 20.12 | 0.02 | 1.721 | 102.91 | 3.91 | 37.7 | 61.0 | 1.3 | -7.26 | 1.53 | 0.69 | 0.69 | 1.79 | 28116 | 2832 | 6 | 0 | 1326 | 0 | 0 | logfile |
✔ | 6JPU | 9871 | 2023-12-15 | 2019-03-28 | 4.27 | 5.69 | — | 6.0 | 0.007 | 1.03 | 0.0 | 0.06 | 17.27 | 0.01 | 1.984 | 70.08 | 9.58 | 9.8 | 90.1 | 0.2 | -3.97 | 0.80 | 0.76 | — | 5.2 | 0.003 | 0.67 | 0.0 | 0.04 | 13.41 | 0.00 | 1.861 | 100.50 | 0.00 | 10.5 | 89.5 | 0.0 | -1.47 | 1.12 | 0.80 | 0.78 | — | 30378 | 3462 | 6 | 0 | 0 | 0 | 2610 | logfile |
✔ | 7UPH | 26666 | 2023-12-16 | 2022-04-15 | 4.18 | 5.35 | 4.33 | 4.2 | 0.007 | 1.00 | 1.0 | 0.05 | 24.48 | 0.02 | 1.193 | 122.79 | 0.02 | 12.5 | 86.5 | 1.0 | -2.90 | 0.63 | 0.35 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 23.63 | 0.01 | 1.174 | 96.02 | 0.04 | 14.2 | 85.2 | 0.6 | -2.70 | 1.32 | 0.87 | 0.77 | — | 141080 | 5442 | 49 | 4556 | 0 | 0 | 625 | logfile |
✔ | 7PTL | 13630 | 2023-12-12 | 2021-09-27 | 4.9 | 10.06 | 4.95 | — | 0.005 | 1.01 | 0.0 | 0.06 | 22.82 | 0.01 | 2.401 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.79 | — | — | 0.008 | 0.91 | 0.0 | 0.04 | 27.28 | 0.01 | 1.689 | 87.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.53 | 0.91 | 0.92 | — | 23080 | 0 | 1 | 720 | 0 | 0 | 7743 | logfile |
✔ | 7SAM | 24952 | 2023-12-07 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 22.03 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.90 | 0.0 | 0.04 | 27.59 | 0.01 | 1.795 | 82.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.58 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7ZJ5 | 14741 | 2023-12-09 | 2022-04-08 | 4.55 | 5.91 | 5.09 | 4.4 | 0.002 | 0.65 | 0.0 | 0.04 | 22.71 | 0.00 | 2.256 | 0.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.85 | — | 4.5 | 0.008 | 0.90 | 0.0 | 0.04 | 25.73 | 0.01 | 1.622 | 78.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.97 | 0.93 | 0.87 | — | 12014 | 0 | 1 | 374 | 1 | 0 | 4030 | logfile |
✔ | 7JGG | 22326 | 2023-12-07 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.47 | 0.0 | 0.03 | 12.80 | 0.00 | 1.958 | 77.81 | 0.00 | 4.3 | 95.7 | 0.0 | 1.53 | 1.24 | 0.66 | 0.69 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 3JAC | 6343 | 2023-12-10 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.06 | 13.69 | 0.01 | 1.923 | 77.11 | 0.00 | 27.1 | 71.7 | 1.2 | -5.31 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |