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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B3A | 15824 | 2023-12-07 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.122 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.078 | 6.51 | 29.0 | 0.43 | 19.99 | 0.05 | 1.652 | 313.51 | 3.81 | 47.3 | 8.0 | 44.7 | -10.72 | 2.68 | 0.43 | 0.58 | 2.94 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2023-12-07 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.191 | 6.68 | 64.0 | 0.43 | 28.26 | 0.04 | 1.558 | 166.46 | 10.71 | 46.7 | 40.0 | 13.3 | -7.58 | 2.35 | 0.64 | 0.88 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2023-12-13 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.18 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.98 | 122.0 | 0.27 | 22.17 | 0.03 | 1.601 | 112.52 | 5.39 | 44.5 | 49.2 | 6.3 | -8.59 | 2.58 | 0.80 | 0.86 | 1.95 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2023-12-09 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2023-12-09 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.50 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.93 | 0.0 | 0.05 | 17.47 | 0.00 | 1.839 | 72.88 | 1.99 | 20.9 | 75.3 | 3.8 | -4.57 | 0.92 | 0.39 | 0.73 | 1.16 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 7K0S | 22615 | 2023-12-09 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 14.04 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.17 | 223.0 | 0.13 | 17.19 | 0.02 | 1.395 | 136.01 | 0.02 | 44.5 | 52.1 | 3.4 | -7.53 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 8oL2 | 16942 | 2023-12-07 | 2023-03-30 | 3.0 | 3.17 | 1.54 | 3.3 | 0.004 | 0.45 | 0.0 | 0.05 | 9.08 | 0.00 | 2.275 | 10.00 | 4.35 | 3.4 | 96.6 | 0.0 | -2.34 | 0.48 | 0.91 | 5.22 | 3.3 | 0.004 | 0.63 | 0.0 | 0.05 | 15.79 | 0.00 | 2.331 | 4.78 | 2.61 | 3.4 | 93.1 | 3.4 | -3.08 | 0.93 | 0.44 | 0.90 | 5.18 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2023-12-07 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.154 | 6.37 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.72 | 5.21 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.78 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2023-12-07 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.018 | 1.82 | 0.0 | 0.06 | 18.29 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.56 | 11.0 | 0.23 | 30.56 | 0.02 | 1.630 | 55.02 | 2.47 | 64.9 | 32.1 | 3.0 | -10.63 | 0.67 | 0.73 | 0.90 | 3.19 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2023-12-10 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.005 | 1.04 | 0.0 | 0.05 | 11.62 | 0.01 | 2.085 | 25.04 | 0.00 | 17.4 | 79.8 | 2.8 | -2.41 | 0.95 | 0.65 | 0.59 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2023-12-16 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.79 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.94 | 52.0 | 0.11 | 17.97 | 0.02 | 1.498 | 186.50 | 4.69 | 52.9 | 44.6 | 2.5 | -8.01 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2023-12-15 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 22.70 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.006 | 0.74 | 0.0 | 0.04 | 23.28 | 0.01 | 1.582 | 65.81 | 2.78 | 18.2 | 79.6 | 2.2 | -3.64 | 1.59 | 0.58 | 0.80 | 1.06 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 8oL6 | 16952 | 2023-12-07 | 2023-03-30 | 3.8 | 3.75 | 2.68 | 3.8 | 0.004 | 0.56 | 0.0 | 0.05 | 9.68 | 0.00 | 2.255 | 9.57 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.46 | 0.86 | 5.96 | 3.8 | 0.005 | 0.76 | 0.0 | 0.06 | 16.09 | 0.00 | 2.354 | 14.13 | 3.48 | 6.6 | 91.4 | 2.1 | -2.64 | 1.23 | 0.45 | 0.85 | 4.61 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2023-12-15 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.09 | 23.08 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.007 | 0.94 | 0.0 | 0.05 | 22.93 | 0.01 | 1.990 | 20.07 | 1.47 | 14.6 | 83.3 | 2.0 | -3.41 | 1.88 | 0.80 | 0.81 | 0.92 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2023-12-15 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 22.71 | 0.01 | 0.682 | 13.02 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.007 | 0.92 | 0.0 | 0.05 | 22.71 | 0.01 | 0.966 | 25.14 | 1.98 | 14.6 | 83.5 | 2.0 | -3.01 | 1.63 | 0.61 | 0.73 | 0.73 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 3JBR | 6475 | 2023-12-11 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.009 | 1.31 | 0.0 | 0.06 | 9.63 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 10.74 | 0.00 | 2.104 | 13.18 | 0.00 | 10.7 | 87.3 | 2.0 | -0.63 | 1.54 | 0.66 | 0.70 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 7XYM | 33522 | 2023-12-10 | 2022-06-01 | 3.3 | 3.70 | 3.42 | 3.6 | 0.009 | 1.58 | 6.0 | 0.07 | 14.87 | 0.01 | 1.028 | 29.59 | 0.49 | 25.5 | 71.6 | 2.9 | -6.19 | 0.71 | 0.74 | 1.93 | 3.6 | 0.005 | 1.11 | 0.0 | 0.06 | 16.43 | 0.01 | 2.042 | 25.55 | 0.57 | 26.6 | 71.6 | 1.8 | -4.90 | 1.14 | 0.70 | 0.79 | 1.95 | 11436 | 1464 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2023-12-12 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.96 | 4.0 | 0.04 | 9.37 | 0.00 | 2.173 | 6.74 | 0.32 | 9.5 | 88.8 | 1.7 | 0.19 | 0.81 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXC | 9893 | 2023-12-10 | 2019-04-23 | 4.1 | 4.20 | — | 4.1 | 0.018 | 1.71 | 0.0 | 0.09 | 8.99 | 0.01 | 2.221 | 4.77 | 0.38 | 9.3 | 87.7 | 3.0 | -1.28 | 0.50 | 0.61 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 12.25 | 0.00 | 2.095 | 10.74 | 0.00 | 11.5 | 86.8 | 1.7 | 0.44 | 0.96 | 0.55 | 0.69 | — | 15270 | 2345 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5iT9 | 8124 | 2023-12-13 | 2016-03-16 | 3.8 | 3.86 | 3.80 | 3.9 | 0.007 | 1.31 | 42.0 | 0.10 | 24.80 | 0.01 | 0.713 | 10.39 | 9.44 | 11.2 | 84.3 | 4.6 | -3.05 | 0.60 | 0.76 | 0.99 | 3.8 | 0.005 | 0.82 | 0.0 | 0.04 | 23.51 | 0.01 | 1.824 | 18.13 | 0.97 | 11.6 | 86.8 | 1.6 | -2.02 | 1.72 | 0.62 | 0.78 | 1.07 | 80144 | 4848 | 43 | 1972 | 83 | 0 | 0 | logfile |