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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PM3 | 13511 | 2023-12-08 | 2021-09-01 | 3.1 | 3.07 | 3.12 | 3.1 | 0.025 | 2.31 | 0.0 | 0.07 | 19.42 | 0.01 | 2.019 | 5.42 | 0.00 | 0.0 | 100.0 | 0.0 | -0.98 | 0.85 | 0.82 | 3.08 | 3.1 | 0.003 | 1.25 | 0.0 | 0.04 | 18.56 | 0.00 | 2.046 | 8.07 | 0.11 | 2.0 | 98.0 | 0.0 | 1.21 | 1.26 | 0.87 | 0.86 | 2.43 | 8940 | 1113 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2023-12-11 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 4.6 | 0.004 | 1.22 | 0.0 | 0.05 | 17.69 | 0.00 | 2.013 | 28.27 | 0.53 | 1.4 | 98.6 | 0.0 | -0.68 | 3.70 | 0.67 | 0.84 | 0.35 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL4 | 16712 | 2023-12-12 | 2023-02-16 | 3.14 | 3.69 | 3.44 | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 12.07 | 0.01 | 2.192 | 3.59 | 0.00 | 0.0 | 100.0 | 0.0 | -0.83 | 0.53 | 0.78 | 2.49 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 16.83 | 0.00 | 2.207 | 10.69 | 0.14 | 1.7 | 98.3 | 0.0 | 1.32 | 2.42 | 0.55 | 0.82 | 1.20 | 13335 | 1725 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2023-12-07 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.6 | 0.002 | 0.45 | 0.0 | 0.05 | 13.95 | 0.00 | 2.206 | 8.61 | 3.20 | 6.0 | 94.0 | 0.0 | -1.52 | 1.10 | 0.24 | 0.71 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 7ZXo | 15012 | 2023-12-11 | 2022-05-21 | 2.5 | 2.89 | 2.54 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 15.39 | 0.01 | 2.216 | 2.71 | 1.36 | 0.0 | 100.0 | 0.0 | 4.19 | 0.72 | 0.88 | 3.47 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 15.90 | 0.00 | 2.186 | 3.88 | 1.73 | 0.6 | 99.4 | 0.0 | 4.29 | 0.62 | 0.65 | 0.92 | 3.20 | 17016 | 2124 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2023-12-09 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL5 | 16949 | 2023-12-07 | 2023-03-30 | 3.4 | 3.10 | 1.47 | 3.0 | 0.003 | 0.44 | 0.0 | 0.06 | 9.97 | 0.00 | 2.393 | 2.17 | 0.00 | 0.0 | 100.0 | 0.0 | -0.75 | 0.53 | 0.87 | 5.76 | 3.0 | 0.004 | 0.50 | 0.0 | 0.05 | 15.79 | 0.00 | 2.344 | 6.30 | 0.00 | 1.7 | 98.3 | 0.0 | -1.33 | 2.41 | 0.55 | 0.88 | 5.15 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XL6 | 22235 | 2023-12-07 | 2020-06-28 | 3.0 | 3.41 | — | 3.3 | 0.005 | 0.68 | 0.0 | 0.05 | 19.90 | 0.00 | 2.257 | 5.23 | 0.00 | 0.0 | 100.0 | 0.0 | -1.93 | 0.76 | 0.83 | 2.94 | 3.3 | 0.005 | 0.56 | 0.0 | 0.04 | 20.69 | 0.00 | 2.250 | 6.76 | 2.65 | 1.5 | 98.5 | 0.0 | 0.46 | 1.38 | 0.75 | 0.83 | 2.88 | 5456 | 536 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 8CKW | 16704 | 2023-12-10 | 2023-02-16 | 3.12 | 3.53 | 3.07 | 3.4 | 0.005 | 0.87 | 0.0 | 0.08 | 12.55 | 0.01 | 0.523 | 4.81 | 0.00 | 0.0 | 100.0 | 0.0 | -0.70 | 0.57 | 0.82 | 3.51 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.24 | 0.00 | 2.211 | 11.20 | 0.27 | 1.1 | 98.9 | 0.0 | 1.42 | 1.20 | 0.58 | 0.85 | 1.95 | 13890 | 1785 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FF3 | 29037 | 2023-12-07 | 2022-12-07 | 3.09 | 2.31 | 2.69 | 3.2 | 0.002 | 0.43 | 0.0 | 0.06 | 8.70 | 0.00 | 2.616 | 1.83 | 0.00 | 0.0 | 100.0 | 0.0 | -2.15 | 0.40 | 0.67 | 4.94 | 3.2 | 0.002 | 0.49 | 0.0 | 0.05 | 11.42 | 0.00 | 2.240 | 6.87 | 0.00 | 1.4 | 98.6 | 0.0 | -2.14 | 0.47 | 0.36 | 0.72 | 4.33 | 2190 | 150 | 6 | 0 | 0 | 0 | 1122 | logfile |
✔ | 8EEP | 28054 | 2023-12-08 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 22.11 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.033 | 1.73 | 0.0 | 0.12 | 19.27 | 0.01 | 1.901 | 9.78 | 1.53 | 1.0 | 99.0 | 0.0 | 1.36 | 1.38 | 0.74 | 0.82 | 3.94 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 7TD6 | 25824 | 2023-12-07 | 2021-12-30 | 3.0 | 3.41 | 3.09 | 3.4 | 0.002 | 0.57 | 0.0 | 0.05 | 16.47 | 0.00 | 2.449 | 7.94 | 0.00 | 0.0 | 100.0 | 0.0 | -3.11 | 0.42 | 0.76 | 2.95 | 3.4 | 0.005 | 0.89 | 0.0 | 0.05 | 18.65 | 0.00 | 2.234 | 13.38 | 3.53 | 9.9 | 90.1 | 0.0 | -4.01 | 1.10 | 0.43 | 0.78 | 3.81 | 5575 | 690 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL2 | 16710 | 2023-12-12 | 2023-02-16 | 3.45 | 3.69 | 3.44 | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 12.07 | 0.01 | 2.192 | 3.59 | 0.00 | 0.0 | 100.0 | 0.0 | -0.83 | 0.54 | 0.79 | 2.49 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 16.83 | 0.00 | 2.207 | 10.69 | 0.14 | 1.7 | 98.3 | 0.0 | 1.32 | 2.42 | 0.56 | 0.84 | 1.20 | 13335 | 1725 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q66 | 13853 | 2023-12-07 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.004 | 0.75 | 0.0 | 0.04 | 16.09 | 0.00 | 2.208 | 12.61 | 6.92 | 0.8 | 99.2 | 0.0 | -4.23 | 0.65 | 0.62 | 0.88 | 4.75 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iXJ | 35793 | 2023-12-10 | 2023-04-01 | 3.1 | 3.03 | 3.07 | 3.1 | 0.012 | 1.45 | 0.0 | 0.09 | 10.47 | 0.00 | 2.412 | 3.04 | 0.00 | 0.0 | 100.0 | 0.0 | 3.48 | 0.67 | 0.86 | 2.90 | 3.1 | 0.003 | 0.33 | 0.0 | 0.03 | 13.96 | 0.00 | 2.249 | 2.57 | 0.29 | 0.0 | 100.0 | 0.0 | 7.00 | 1.01 | 0.66 | 0.86 | 1.03 | 13760 | 1840 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PBW | 13307 | 2023-12-08 | 2021-08-02 | 2.1 | 1.98 | — | 2.1 | 0.009 | 0.99 | 0.0 | 0.05 | 12.27 | 0.01 | 2.243 | 2.93 | 0.00 | 0.0 | 100.0 | 0.0 | 3.14 | 0.78 | 0.90 | 7.90 | 2.1 | 0.004 | 0.76 | 0.0 | 0.04 | 14.47 | 0.01 | 2.150 | 7.99 | 0.00 | 0.0 | 100.0 | 0.0 | 4.46 | 0.28 | 0.77 | 0.90 | 7.32 | 9500 | 873 | 54 | 0 | 81 | 230 | 0 | logfile |
✔ | 6ULC | 20813 | 2023-12-12 | 2019-10-07 | 4.6 | 4.75 | — | 4.5 | 0.006 | 0.94 | 0.0 | 0.07 | 16.70 | 0.00 | 2.086 | 5.68 | 0.29 | 0.0 | 100.0 | 0.0 | -4.46 | 0.79 | 0.67 | — | 4.5 | 0.004 | 0.92 | 0.0 | 0.06 | 13.90 | 0.00 | 2.068 | 21.97 | 0.00 | 12.4 | 87.6 | 0.0 | -2.89 | 0.83 | 0.79 | 0.71 | — | 19968 | 2301 | 46 | 0 | 142 | 0 | 0 | logfile |
✔ | 6YoV | 10864 | 2023-12-09 | 2020-04-15 | 3.42 | 4.61 | — | 3.9 | 0.011 | 1.14 | 0.0 | 0.07 | 25.19 | 0.01 | 2.395 | 0.86 | 0.00 | 0.0 | 100.0 | 0.0 | 0.87 | 0.88 | 0.82 | 1.84 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 25.94 | 0.00 | 2.129 | 12.07 | 0.43 | 1.6 | 98.4 | 0.0 | 2.32 | 1.24 | 0.88 | 0.84 | 1.89 | 12298 | 898 | 18 | 262 | 8 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2023-12-07 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.122 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.078 | 6.51 | 29.0 | 0.43 | 19.99 | 0.05 | 1.652 | 313.51 | 3.81 | 47.3 | 8.0 | 44.7 | -10.72 | 2.68 | 0.43 | 0.58 | 2.94 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 8BFB | 16019 | 2023-12-07 | 2022-10-24 | 3.2 | 3.13 | 3.01 | 3.2 | 0.003 | 0.44 | 0.0 | 0.06 | 13.91 | 0.00 | 2.552 | 9.16 | 0.00 | 0.0 | 100.0 | 0.0 | -3.20 | 0.49 | 0.83 | 5.20 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 17.53 | 0.00 | 2.364 | 6.10 | 0.00 | 2.8 | 97.2 | 0.0 | -3.12 | 1.03 | 0.52 | 0.86 | 7.13 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |