The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J2P | 5499 | 2023-12-09 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.50 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.93 | 0.0 | 0.05 | 17.47 | 0.00 | 1.839 | 72.88 | 1.99 | 20.9 | 75.3 | 3.8 | -4.57 | 0.92 | 0.39 | 0.73 | 1.16 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 3LoS | 5137 | 2023-12-09 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2023-12-09 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.41 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.0 | 0.004 | 0.92 | 0.0 | 0.04 | 20.79 | 0.01 | 2.088 | 17.33 | 1.28 | 8.8 | 89.8 | 1.5 | -2.84 | 1.27 | 0.55 | 0.79 | 2.18 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 6KiQ | 9997 | 2023-12-10 | 2019-07-19 | 3.62 | 3.66 | — | 3.8 | 0.035 | 3.74 | 145.0 | 0.27 | 19.81 | 0.04 | 2.201 | 12.20 | 14.75 | 18.6 | 70.7 | 10.7 | -6.77 | 0.58 | 0.71 | 1.68 | 3.5 | 0.003 | 0.79 | 0.0 | 0.04 | 17.15 | 0.01 | 2.016 | 12.53 | 0.36 | 12.1 | 87.3 | 0.6 | -2.66 | 1.19 | 0.62 | 0.75 | 1.32 | 15093 | 968 | 3 | 0 | 0 | 0 | 7444 | logfile |
✔ | 7ASK | 11895 | 2023-12-09 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.14 | 2.0 | 0.05 | 15.52 | 0.01 | 1.979 | 19.61 | 0.00 | 18.6 | 79.9 | 1.4 | -3.48 | 1.34 | 0.19 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2023-12-15 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.73 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.005 | 0.95 | 0.0 | 0.05 | 15.10 | 0.01 | 2.049 | 16.40 | 0.00 | 10.2 | 89.4 | 0.4 | -1.58 | 1.74 | 0.69 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2023-12-10 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.005 | 1.04 | 0.0 | 0.05 | 11.62 | 0.01 | 2.085 | 25.04 | 0.00 | 17.4 | 79.8 | 2.8 | -2.41 | 0.95 | 0.65 | 0.59 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-12-09 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 16.23 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.90 | 0.0 | 0.05 | 12.25 | 0.00 | 2.047 | 18.43 | 0.00 | 7.5 | 91.6 | 0.9 | -0.57 | 1.16 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-12-11 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 24.78 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.036 | 1.48 | 0.0 | 0.04 | 22.24 | 0.02 | 2.008 | 17.16 | 1.21 | 8.6 | 90.7 | 0.7 | -2.77 | 2.00 | 0.62 | 0.81 | 1.39 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 8GRN | 34209 | 2023-12-09 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.95 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 19.31 | 0.01 | 1.940 | 9.44 | 3.96 | 9.7 | 89.7 | 0.6 | -0.17 | 1.25 | 0.44 | 0.71 | 2.57 | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2023-12-12 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.96 | 4.0 | 0.04 | 9.37 | 0.00 | 2.173 | 6.74 | 0.32 | 9.5 | 88.8 | 1.7 | 0.19 | 0.81 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Kio | 9996 | 2023-12-10 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 17.12 | 0.00 | 1.994 | 11.47 | 0.24 | 7.2 | 92.4 | 0.4 | -1.20 | 1.65 | 0.65 | 0.77 | 1.29 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 3JBR | 6475 | 2023-12-11 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.009 | 1.31 | 0.0 | 0.06 | 9.63 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 10.74 | 0.00 | 2.104 | 13.18 | 0.00 | 10.7 | 87.3 | 2.0 | -0.63 | 1.54 | 0.66 | 0.70 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-12-12 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.004 | 1.04 | 0.0 | 0.05 | 13.71 | 0.01 | 1.950 | 32.75 | 0.09 | 15.2 | 83.8 | 1.0 | -3.85 | 4.19 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2023-12-15 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 22.70 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.006 | 0.74 | 0.0 | 0.04 | 23.28 | 0.01 | 1.582 | 65.81 | 2.78 | 18.2 | 79.6 | 2.2 | -3.64 | 1.59 | 0.58 | 0.80 | 1.06 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 8GSo | 34237 | 2023-12-09 | 2022-09-06 | 3.3 | 3.69 | 3.38 | 3.7 | 0.013 | 1.66 | 18.0 | 0.11 | 25.12 | 0.01 | 1.194 | 20.44 | 41.49 | 17.0 | 76.3 | 6.7 | -5.21 | 0.57 | 0.72 | 1.47 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 17.77 | 0.01 | 2.129 | 13.25 | 0.52 | 12.7 | 86.8 | 0.5 | -0.35 | 1.07 | 0.55 | 0.83 | 1.88 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GRo | 34210 | 2023-12-09 | 2022-09-02 | 3.5 | 3.98 | 3.66 | 3.9 | 0.013 | 1.67 | 17.0 | 0.11 | 25.25 | 0.01 | 1.194 | 18.95 | 41.49 | 16.3 | 77.1 | 6.6 | -5.21 | 0.60 | 0.74 | 1.94 | 3.9 | 0.004 | 0.86 | 0.0 | 0.04 | 18.60 | 0.01 | 2.139 | 18.39 | 0.95 | 12.3 | 87.5 | 0.2 | -0.77 | 1.31 | 0.57 | 0.81 | 1.64 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2023-12-15 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 22.71 | 0.01 | 0.682 | 13.02 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.007 | 0.92 | 0.0 | 0.05 | 22.71 | 0.01 | 0.966 | 25.14 | 1.98 | 14.6 | 83.5 | 2.0 | -3.01 | 1.63 | 0.61 | 0.73 | 0.73 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 3J7Z | 6057 | 2023-12-15 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.09 | 23.08 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.007 | 0.94 | 0.0 | 0.05 | 22.93 | 0.01 | 1.990 | 20.07 | 1.47 | 14.6 | 83.3 | 2.0 | -3.41 | 1.88 | 0.80 | 0.81 | 0.92 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 3J8i | 6179 | 2023-12-10 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.17 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | 4.7 | 0.003 | 0.92 | 0.0 | 0.04 | 14.37 | 0.00 | 2.050 | 17.08 | 0.00 | 11.4 | 88.1 | 0.5 | -1.97 | 1.76 | 0.64 | 0.70 | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |