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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8DK5 | 27483 | 2024-01-20 | 2022-07-02 | 2.71 | 3.29 | 2.87 | 3.2 | 0.011 | 1.11 | 3.0 | 0.07 | 27.41 | 0.01 | 2.088 | 9.15 | 0.39 | 4.6 | 95.3 | 0.2 | -0.97 | 0.74 | 0.79 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15618 | 1210 | 12 | 298 | 0 | 0 | 0 | logfile |
✘ | 8H0P | 34413 | 2024-01-18 | 2022-09-30 | 3.15 | 2.98 | 3.14 | 3.2 | 0.001 | 0.40 | 0.0 | 0.04 | 7.54 | 0.00 | 2.208 | 5.68 | 0.10 | 1.2 | 98.8 | 0.0 | -2.49 | 0.52 | 0.65 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8932 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HG3 | 34733 | 2024-01-18 | 2022-11-13 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7456 | 604 | 6 | 0 | 62 | 0 | 0 | logfile |
✘ | 8F54 | 28860 | 2024-01-20 | 2022-11-11 | 2.5 | 2.67 | 2.56 | 2.7 | 0.003 | 0.45 | 0.0 | 0.03 | 11.59 | 0.00 | 2.491 | 0.57 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.68 | 0.76 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66960 | 4020 | 60 | 0 | 0 | 0 | 33840 | logfile |
✘ | 7ZPo | 14859 | 2024-01-20 | 2022-04-28 | 3.24 | 2.81 | 3.17 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 16.16 | 0.00 | 2.053 | 10.37 | 0.00 | 1.3 | 98.7 | 0.0 | 1.71 | 0.65 | 0.82 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15102 | 1932 | 20 | 0 | 16 | 0 | 0 | logfile |
✘ | 8T6J | 41069 | 2024-01-19 | 2023-06-16 | 3.5 | 3.65 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.75 | 0.00 | 2.196 | 6.10 | 0.00 | 5.1 | 94.9 | 0.0 | 0.00 | 0.80 | 0.79 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11652 | 1534 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8EoR | 28465 | 2024-01-19 | 2022-10-04 | 2.67 | 2.82 | 2.67 | 2.9 | 0.004 | 0.64 | 0.0 | 0.04 | 13.33 | 0.00 | 2.303 | 2.64 | 0.45 | 2.2 | 97.8 | 0.0 | 0.50 | 0.60 | 0.75 | 4.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12522 | 1596 | 9 | 0 | 12 | 0 | 0 | logfile |
✘ | 8SA3 | 40263 | 2024-01-18 | 2023-03-31 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✘ | 8ESW | 28581 | 2024-01-20 | 2022-10-15 | 3.3 | 3.67 | 3.46 | 3.7 | 0.006 | 1.01 | 0.0 | 1.05 | 16.62 | 0.01 | 1.932 | 5.33 | 0.63 | 3.0 | 97.0 | 0.0 | -2.36 | 0.74 | 0.83 | 2.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66555 | 8036 | 64 | 0 | 76 | 0 | 0 | logfile |
✘ | 8HW4 | 35050 | 2024-01-19 | 2022-12-28 | 3.52 | 3.89 | 3.62 | 3.8 | 0.033 | 1.39 | 0.0 | 0.17 | 15.27 | 0.01 | 2.142 | 14.67 | 0.09 | 8.2 | 91.8 | 0.0 | -2.38 | 0.67 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10746 | 1364 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7ZRZ | 14923 | 2024-01-17 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8D2S | 27148 | 2024-01-18 | 2022-05-30 | 2.9 | 3.02 | 2.89 | 3.0 | 0.011 | 1.35 | 0.0 | 0.05 | 26.51 | 0.01 | 2.297 | 6.89 | 0.80 | 5.0 | 95.0 | 0.0 | -1.07 | 0.70 | 0.81 | 4.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7071 | 879 | 5 | 0 | 21 | 27 | 0 | logfile |
✘ | 8SL0 | 40570 | 2024-01-17 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BPB | 16148 | 2024-01-18 | 2022-11-16 | 2.8 | 2.48 | 3.00 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 17.77 | 0.00 | 1.755 | 8.92 | 2.96 | 2.5 | 97.5 | 0.0 | 0.64 | 0.74 | 0.80 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8384 | 1030 | 7 | 0 | 6 | 12 | 0 | logfile |
✘ | 8oiT | 16899 | 2024-01-19 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |
✘ | 8CBN | 16546 | 2024-01-20 | 2023-01-25 | 3.34 | 3.92 | 3.27 | 3.7 | 0.008 | 0.72 | 0.0 | 0.04 | 25.79 | 0.01 | 0.876 | 6.35 | 2.28 | 4.8 | 95.2 | 0.0 | -5.72 | 0.71 | 0.78 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13669 | 939 | 12 | 300 | 0 | 0 | 0 | logfile |
✘ | 8iUM | 35726 | 2024-01-19 | 2023-03-24 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9955 | 1270 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8Do3 | 27589 | 2024-01-17 | 2022-07-12 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4185 | 534 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2024-01-17 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YCA | 33737 | 2024-01-19 | 2022-07-01 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64832 | 5632 | 60 | 0 | 450 | 4 | 0 | logfile |