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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8F68 | 28877 | 2024-01-18 | 2022-11-16 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9666 | 1198 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7XE4 | 33154 | 2024-01-19 | 2022-03-29 | 3.4 | 3.88 | — | 3.8 | 0.006 | 0.86 | 0.0 | 0.04 | 15.21 | 0.01 | 2.199 | 8.78 | 0.45 | 10.0 | 89.6 | 0.4 | -2.45 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12529 | 1503 | 3 | 0 | 27 | 0 | 0 | logfile |
✘ | 7SY0 | 25512 | 2024-01-17 | 2021-11-24 | 3.0 | 3.75 | — | 3.5 | 0.005 | 0.84 | 0.0 | 0.06 | 13.35 | 0.01 | 2.295 | 2.42 | 0.00 | 1.4 | 98.6 | 0.0 | -0.49 | 0.80 | 0.83 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6553 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 6ETi | 3953 | 2024-01-19 | 2017-10-26 | 3.1 | 3.22 | — | 3.2 | 0.010 | 1.09 | 0.0 | 0.06 | 11.80 | 0.01 | 2.316 | 3.13 | 0.30 | 5.3 | 94.5 | 0.2 | -4.70 | 0.73 | 0.88 | 4.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12442 | 1582 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 8F6E | 28881 | 2024-01-19 | 2022-11-16 | 3.8 | 4.02 | 3.70 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.52 | 0.00 | 2.060 | 5.75 | 0.00 | 5.4 | 94.2 | 0.4 | -0.77 | 0.72 | 0.75 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10478 | 1366 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 8C0Z | 16376 | 2024-01-20 | 2022-12-19 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15083 | 1972 | 10 | 0 | 17 | 0 | 0 | logfile |
✘ | 8GRX | 34216 | 2024-01-18 | 2022-09-02 | 3.0 | 3.20 | 2.99 | 3.2 | 0.007 | 1.26 | 0.0 | 0.05 | 12.30 | 0.00 | 2.373 | 6.41 | 0.22 | 3.5 | 96.2 | 0.4 | -0.43 | 0.72 | 0.81 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8328 | 1056 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7K0K | 22600 | 2024-01-18 | 2020-09-04 | 2.6 | 2.96 | — | 2.9 | 0.006 | 0.68 | 0.0 | 0.05 | 12.49 | 0.00 | 1.915 | 7.43 | 0.00 | 2.2 | 97.8 | 0.0 | 0.53 | 0.68 | 0.85 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7615 | 964 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8iXL | 35795 | 2024-01-19 | 2023-04-01 | 3.5 | 3.61 | 3.45 | 3.6 | 0.012 | 1.48 | 0.0 | 0.10 | 11.65 | 0.00 | 2.568 | 2.07 | 0.00 | 0.4 | 99.6 | 0.0 | 2.40 | 0.71 | 0.84 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10970 | 1455 | 35 | 0 | 0 | 0 | 0 | logfile |
✘ | 5oQJ | 3846 | 2024-01-19 | 2017-08-11 | 4.7 | 4.68 | — | 4.2 | 0.007 | 0.54 | 0.0 | 0.04 | 12.58 | 0.00 | 1.336 | 7.82 | 0.30 | 6.5 | 92.3 | 1.2 | -3.41 | 0.70 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62931 | 7649 | 43 | 148 | 557 | 0 | 0 | logfile |
✘ | 6YXR | 10995 | 2024-01-18 | 2020-05-03 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31910 | 2783 | 20 | 0 | 194 | 0 | 0 | logfile |
✘ | 5GL0 | 9520 | 2024-01-18 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6SKL | 10227 | 2024-01-20 | 2019-08-16 | 3.7 | 3.87 | — | 3.7 | 0.013 | 1.93 | 50.0 | 0.11 | 15.51 | 0.02 | 1.901 | 0.27 | 0.09 | 3.3 | 96.7 | 0.0 | -1.69 | 0.71 | 0.72 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 118181 | 7251 | 24 | 59 | 11 | 0 | 58997 | logfile |
✘ | 3J8H | 2807 | 2024-01-18 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✘ | 7KU7 | 23035 | 2024-01-20 | 2020-11-24 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 16 | 68 | 8 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2024-01-18 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 7YRQ | 34064 | 2024-01-18 | 2022-08-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9812 | 1247 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2024-01-20 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7AoD | 11841 | 2024-01-18 | 2020-10-14 | 4.5 | 4.61 | — | 4.5 | 0.007 | 0.89 | 0.0 | 0.05 | 14.84 | 0.01 | 1.858 | 27.36 | 1.95 | 10.7 | 88.9 | 0.3 | -4.20 | 0.79 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59256 | 7466 | 34 | 0 | 12 | 0 | 0 | logfile |
✘ | 8FHD | 29082 | 2024-01-19 | 2022-12-14 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12686 | 1467 | 6 | 0 | 35 | 0 | 0 | logfile |