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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW4 | 9540 | 2024-03-12 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2024-03-19 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6K9L | 9950 | 2024-03-21 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.79 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2024-03-19 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 8HZN | 35089 | 2024-03-15 | 2023-01-09 | 3.25 | 2.62 | 3.24 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 8.51 | 0.00 | 2.182 | 6.40 | 3.12 | 5.2 | 94.7 | 0.1 | -3.99 | 0.78 | 0.77 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10200 | 1330 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8C8H | 16476 | 2024-03-24 | 2023-01-20 | 3.84 | 4.03 | 3.97 | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 14.85 | 0.01 | 2.105 | 7.26 | 4.29 | 6.6 | 93.4 | 0.0 | -3.34 | 0.82 | 0.73 | 1.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41296 | 4915 | 27 | 63 | 5 | 61 | 0 | logfile |
✘ | 6V4U | 21048 | 2024-03-11 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8J4T | 35977 | 2024-03-19 | 2023-04-20 | 3.6 | 3.75 | 3.63 | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 13.80 | 0.00 | 2.190 | 10.72 | 0.00 | 4.3 | 95.5 | 0.1 | 0.04 | 0.74 | 0.75 | 1.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22628 | 2776 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HZC | 35088 | 2024-03-10 | 2023-01-08 | 3.2 | 3.16 | 2.79 | 3.3 | 0.002 | 0.51 | 0.0 | 0.05 | 13.53 | 0.00 | 2.497 | 11.14 | 0.00 | 11.3 | 88.7 | 0.0 | -5.03 | 0.39 | 0.85 | 4.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3108 | 450 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PE7 | 13347 | 2024-03-11 | 2021-08-09 | 3.41 | 3.76 | — | 3.7 | 0.002 | 0.46 | 0.0 | 0.04 | 9.06 | 0.00 | 2.205 | 4.36 | 0.98 | 3.3 | 96.6 | 0.1 | -0.02 | 0.78 | 0.80 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58582 | 7664 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 8FU6 | 29453 | 2024-03-11 | 2023-01-16 | 2.9 | 3.13 | 2.94 | 3.2 | 0.002 | 0.60 | 0.0 | 0.04 | 12.46 | 0.00 | 2.199 | 3.83 | 0.00 | 2.6 | 97.4 | 0.0 | 0.07 | 0.58 | 0.80 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8834 | 1112 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7o4K | 12721 | 2024-03-22 | 2021-04-06 | 3.6 | 3.32 | 3.45 | 3.2 | 0.002 | 0.46 | 0.0 | 0.04 | 14.04 | 0.00 | 2.001 | 3.39 | 0.00 | 2.0 | 98.0 | 0.0 | 1.05 | 0.64 | 0.72 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34264 | 4216 | 25 | 20 | 14 | 0 | 0 | logfile |
✘ | 7SH2 | 25122 | 2024-03-18 | 2021-10-07 | 3.23 | 3.55 | — | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 15.29 | 0.00 | 2.135 | 7.83 | 0.04 | 4.4 | 95.6 | 0.0 | 0.45 | 0.69 | 0.68 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20933 | 2545 | 15 | 23 | 9 | 0 | 0 | logfile |
✘ | 8PWL | 17994 | 2024-03-15 | 2023-07-20 | 4.73 | 5.25 | 4.85 | 4.8 | 0.002 | 0.51 | 0.0 | 0.04 | 13.55 | 0.00 | 2.250 | 5.28 | 0.00 | 2.0 | 98.0 | 0.0 | -0.12 | 0.83 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12266 | 1541 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XoL | 33351 | 2024-03-10 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2024-03-11 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UY7 | 26866 | 2024-03-16 | 2022-05-06 | 4.2 | 4.18 | 4.04 | 3.2 | 0.002 | 0.56 | 1.0 | 0.04 | 15.12 | 0.00 | 2.203 | 13.96 | 0.18 | 3.8 | 96.2 | 0.0 | -0.53 | 0.73 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15161 | 1808 | 7 | 10 | 1 | 0 | 0 | logfile |
✘ | 7ZGK | 14708 | 2024-03-16 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2024-03-21 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 8GKG | 40183 | 2024-03-17 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |